miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 19499 0.66 0.919162
Target:  5'- cCGCUGGCcgUUGGCgaCGAGugGCcuCCg -3'
miRNA:   3'- cGCGGCUGcaAACCG--GCUCugCGu-GG- -5'
5144 3' -56.4 NC_001798.1 + 23357 0.66 0.919162
Target:  5'- cCGCCGGCGcucGGCCGccucuGACuCAUCa -3'
miRNA:   3'- cGCGGCUGCaaaCCGGCu----CUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 30754 0.66 0.919162
Target:  5'- -gGaCCcGCGUggaGGCCGAGGCG-GCCg -3'
miRNA:   3'- cgC-GGcUGCAaa-CCGGCUCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 96080 0.66 0.918046
Target:  5'- cCGCCGcCGcaucaguccGCgCGGGGCGCGCCu -3'
miRNA:   3'- cGCGGCuGCaaac-----CG-GCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 67492 0.66 0.916922
Target:  5'- -gGCCG-CGg--GGCCGGGGggaucgcuggaaaGCACCa -3'
miRNA:   3'- cgCGGCuGCaaaCCGGCUCUg------------CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 121927 0.66 0.913494
Target:  5'- cGCGCUGGuccagcgGGCCGugcaGGACGuCACCc -3'
miRNA:   3'- -CGCGGCUgcaaa--CCGGC----UCUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 50088 0.66 0.913494
Target:  5'- cGCuCCuGCGga-GGCCGggcuGGugGCGCCg -3'
miRNA:   3'- -CGcGGcUGCaaaCCGGC----UCugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 80438 0.66 0.913494
Target:  5'- aGCGCCG-C-UUUGGCCGcgcuGugG-ACCu -3'
miRNA:   3'- -CGCGGCuGcAAACCGGCu---CugCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 97046 0.66 0.913494
Target:  5'- -gGCCGACGcccuGCUgGAGGCGCAUg -3'
miRNA:   3'- cgCGGCUGCaaacCGG-CUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 5384 0.66 0.913494
Target:  5'- cGCGuCCGugGcggcGGCCcguuGGuCGCGCCg -3'
miRNA:   3'- -CGC-GGCugCaaa-CCGGc---UCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 48359 0.66 0.912914
Target:  5'- cGCgGCCGccCGg--GGCCGccccgcgGGGCGUGCCg -3'
miRNA:   3'- -CG-CGGCu-GCaaaCCGGC-------UCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 61865 0.66 0.911162
Target:  5'- cCGCCGGCccagcccggcGGCCcccucGGGCGCGCCc -3'
miRNA:   3'- cGCGGCUGcaaa------CCGGc----UCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 1607 0.66 0.907597
Target:  5'- cGCGguaCCGcACG-UUGGCCccgcggcaGAGGCGCAgCg -3'
miRNA:   3'- -CGC---GGC-UGCaAACCGG--------CUCUGCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 26348 0.66 0.907597
Target:  5'- cGUGCgCGGCGgcccGGCgGAGcuGCGCggGCCg -3'
miRNA:   3'- -CGCG-GCUGCaaa-CCGgCUC--UGCG--UGG- -5'
5144 3' -56.4 NC_001798.1 + 54810 0.66 0.907597
Target:  5'- cCGCgGGCGUcgGGCUu-GGCGcCACCc -3'
miRNA:   3'- cGCGgCUGCAaaCCGGcuCUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 105304 0.66 0.907597
Target:  5'- aGCGCCuccagGGCGUc-GGCgaUGuGAUGCACCu -3'
miRNA:   3'- -CGCGG-----CUGCAaaCCG--GCuCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 111020 0.66 0.907597
Target:  5'- cGCgGCCaGGCGUccgUGGCCG--GCGUACa -3'
miRNA:   3'- -CG-CGG-CUGCAa--ACCGGCucUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 128948 0.66 0.907597
Target:  5'- cGCGCCcgggcGCGUUccgGGCCcggagGAGGCGCucgucACCc -3'
miRNA:   3'- -CGCGGc----UGCAAa--CCGG-----CUCUGCG-----UGG- -5'
5144 3' -56.4 NC_001798.1 + 93883 0.66 0.907597
Target:  5'- cGCGCgGACGggUccgagaacacccGGaCCaucaugcagGAGACGUACCg -3'
miRNA:   3'- -CGCGgCUGCaaA------------CC-GG---------CUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 1503 0.66 0.907597
Target:  5'- cGCGCCcgaGGCGgcggcccGGCCGuccaGCGCCg -3'
miRNA:   3'- -CGCGG---CUGCaaa----CCGGCucugCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.