miRNA display CGI


Results 41 - 60 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 105304 0.66 0.907597
Target:  5'- aGCGCCuccagGGCGUc-GGCgaUGuGAUGCACCu -3'
miRNA:   3'- -CGCGG-----CUGCAaaCCG--GCuCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 111020 0.66 0.907597
Target:  5'- cGCgGCCaGGCGUccgUGGCCG--GCGUACa -3'
miRNA:   3'- -CG-CGG-CUGCAa--ACCGGCucUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 128948 0.66 0.907597
Target:  5'- cGCGCCcgggcGCGUUccgGGCCcggagGAGGCGCucgucACCc -3'
miRNA:   3'- -CGCGGc----UGCAAa--CCGG-----CUCUGCG-----UGG- -5'
5144 3' -56.4 NC_001798.1 + 93883 0.66 0.907597
Target:  5'- cGCGCgGACGggUccgagaacacccGGaCCaucaugcagGAGACGUACCg -3'
miRNA:   3'- -CGCGgCUGCaaA------------CC-GG---------CUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 104142 0.66 0.907597
Target:  5'- uCGUCGACGccagUGGCCGccccgccuGGGCGU-CCa -3'
miRNA:   3'- cGCGGCUGCaa--ACCGGC--------UCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 28046 0.66 0.90395
Target:  5'- uGCGUaCGACucgggaaccgcGGUCGAGAgCGCGCCg -3'
miRNA:   3'- -CGCG-GCUGcaaa-------CCGGCUCU-GCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 62334 0.66 0.901474
Target:  5'- aCGCUGACcgc-GGCCccggucggccucGAGACGCGCa -3'
miRNA:   3'- cGCGGCUGcaaaCCGG------------CUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 3709 0.66 0.901474
Target:  5'- cGCGuCCGGCGUguacagcaGCCGcgugaucaGGGCGUACUg -3'
miRNA:   3'- -CGC-GGCUGCAaac-----CGGC--------UCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 17711 0.66 0.901474
Target:  5'- cGCGCCu-CGU--GGCuCGugcuGGCGUACCa -3'
miRNA:   3'- -CGCGGcuGCAaaCCG-GCu---CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 29012 0.66 0.901474
Target:  5'- cGCGCCGccGCGcg-GGCCcGGACucCGCCc -3'
miRNA:   3'- -CGCGGC--UGCaaaCCGGcUCUGc-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 59985 0.66 0.901474
Target:  5'- cCGCCGacaccGCGUUggGGCCG-GugGCGgUg -3'
miRNA:   3'- cGCGGC-----UGCAAa-CCGGCuCugCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 141089 0.67 0.897692
Target:  5'- -aGCUGACGgcaGaacuccugucgcuacGCCGGGACGcCGCCg -3'
miRNA:   3'- cgCGGCUGCaaaC---------------CGGCUCUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 41175 0.67 0.895771
Target:  5'- uGCgGCCGGCGUaguucaaaagauaggUcGCCGGGGC-CACCa -3'
miRNA:   3'- -CG-CGGCUGCAa--------------AcCGGCUCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 70609 0.67 0.895126
Target:  5'- uGUGCCGugGagUGGaUCGAccgcuGGCGgACCg -3'
miRNA:   3'- -CGCGGCugCaaACC-GGCU-----CUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 98054 0.67 0.895126
Target:  5'- aGCGUCGAgaaCGUggGGCUccuGcCGCACCu -3'
miRNA:   3'- -CGCGGCU---GCAaaCCGGcu-CuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 107565 0.67 0.895126
Target:  5'- uUGCCugggucuugGACGUcUUGGCCGAccgccuccuuccGAUGCAUCu -3'
miRNA:   3'- cGCGG---------CUGCA-AACCGGCU------------CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 121067 0.67 0.895126
Target:  5'- uGCGCCcGCG---GGCCccgaGGACGCGCa -3'
miRNA:   3'- -CGCGGcUGCaaaCCGGc---UCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 22391 0.67 0.895126
Target:  5'- gGCGgaaccCCGGCGa---GCCGGGGCGCGgCg -3'
miRNA:   3'- -CGC-----GGCUGCaaacCGGCUCUGCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 52419 0.67 0.895126
Target:  5'- cGUGCUgGGCGc--GGCCGuGuACGCGCUg -3'
miRNA:   3'- -CGCGG-CUGCaaaCCGGCuC-UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 56521 0.67 0.895126
Target:  5'- -aGCgGAuCGUggcgGuGCCGGGGCGC-CCg -3'
miRNA:   3'- cgCGgCU-GCAaa--C-CGGCUCUGCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.