miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 125761 1.13 0.001711
Target:  5'- uGCGCCGACGUUUGGCCGAGACGCACCu -3'
miRNA:   3'- -CGCGGCUGCAAACCGGCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 34978 0.82 0.175984
Target:  5'- cCGCCGAgGUgcgggggccccuccGGCCGGGGCGCACCu -3'
miRNA:   3'- cGCGGCUgCAaa------------CCGGCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 2418 0.81 0.213511
Target:  5'- gGCGCCGGCGUgUGGCUGGGccccggcggcugGCgGCGCCa -3'
miRNA:   3'- -CGCGGCUGCAaACCGGCUC------------UG-CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 93275 0.8 0.235017
Target:  5'- cGCGCCGGCGcc--GUCGGGGCGUACCu -3'
miRNA:   3'- -CGCGGCUGCaaacCGGCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 36627 0.79 0.264423
Target:  5'- gGCGCgCGGCGgccgGGCgGGGGCGCGCUu -3'
miRNA:   3'- -CGCG-GCUGCaaa-CCGgCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 25505 0.79 0.270651
Target:  5'- uGCGCCGcGCGgc-GGCCuGGAUGCGCCa -3'
miRNA:   3'- -CGCGGC-UGCaaaCCGGcUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 34042 0.79 0.290043
Target:  5'- gGCGCCacacccACGgcugUGGCCGGGcACGCGCCu -3'
miRNA:   3'- -CGCGGc-----UGCaa--ACCGGCUC-UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 103733 0.79 0.290043
Target:  5'- cCGCCGACGUccgGGCCGGGACuaaaGCCc -3'
miRNA:   3'- cGCGGCUGCAaa-CCGGCUCUGcg--UGG- -5'
5144 3' -56.4 NC_001798.1 + 36522 0.79 0.296745
Target:  5'- gGCGCgCGGCGgccgGGCgGGGGCGCGCg -3'
miRNA:   3'- -CGCG-GCUGCaaa-CCGgCUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 36564 0.79 0.296745
Target:  5'- gGCGCgCGGCGgccgGGCgGGGGCGCGCg -3'
miRNA:   3'- -CGCG-GCUGCaaa-CCGgCUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 153701 0.78 0.310507
Target:  5'- cCGCCGGCGca-GGCUcAGGCGCGCCa -3'
miRNA:   3'- cGCGGCUGCaaaCCGGcUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 31656 0.78 0.317569
Target:  5'- aGCGCgGACGc--GGCCGGGccCGCGCCg -3'
miRNA:   3'- -CGCGgCUGCaaaCCGGCUCu-GCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 38794 0.78 0.32475
Target:  5'- cGCGCuCGACGcggUUGG-CGAGGCGgGCCa -3'
miRNA:   3'- -CGCG-GCUGCa--AACCgGCUCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 77762 0.78 0.339474
Target:  5'- cGCGCCGAguuCGacgUGGUCGAGcUGCGCCg -3'
miRNA:   3'- -CGCGGCU---GCaa-ACCGGCUCuGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 36296 0.77 0.354675
Target:  5'- gGUGCCGugGgugUGGCggCGGGGCGCggGCCg -3'
miRNA:   3'- -CGCGGCugCaa-ACCG--GCUCUGCG--UGG- -5'
5144 3' -56.4 NC_001798.1 + 84108 0.77 0.37035
Target:  5'- -gGCCgGGCGUccaGGCCGAGGCGCcCCu -3'
miRNA:   3'- cgCGG-CUGCAaa-CCGGCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 28670 0.76 0.386493
Target:  5'- gGCGCCG-CGUggcggcGGCCGAGGCGguCa -3'
miRNA:   3'- -CGCGGCuGCAaa----CCGGCUCUGCguGg -5'
5144 3' -56.4 NC_001798.1 + 102643 0.76 0.386493
Target:  5'- uCGCCgGGCGgcggaggGGCCGGGGCGC-CCg -3'
miRNA:   3'- cGCGG-CUGCaaa----CCGGCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 32317 0.76 0.394736
Target:  5'- uGCGCCG-CGgg-GGCCGAGGaagUGUGCCa -3'
miRNA:   3'- -CGCGGCuGCaaaCCGGCUCU---GCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 26280 0.76 0.394736
Target:  5'- cGCGCCuGCGcgcgcuggGGCCuGGGCGCGCCg -3'
miRNA:   3'- -CGCGGcUGCaaa-----CCGGcUCUGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.