miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 51814 0.66 0.919162
Target:  5'- gGCGaUCaACGggUGGgucugCGGGACGCGCCu -3'
miRNA:   3'- -CGC-GGcUGCaaACCg----GCUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 95687 0.66 0.9246
Target:  5'- gGCGgCGGCGggggcGGCCGGcGuCGC-CCg -3'
miRNA:   3'- -CGCgGCUGCaaa--CCGGCU-CuGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 26561 0.66 0.9246
Target:  5'- gGgGCUGGCcacgccGCCGAGGCGCgaGCCc -3'
miRNA:   3'- -CgCGGCUGcaaac-CGGCUCUGCG--UGG- -5'
5144 3' -56.4 NC_001798.1 + 23840 0.66 0.9246
Target:  5'- cGUGCUGuACGgcgGGCUG-GGCGacaGCCg -3'
miRNA:   3'- -CGCGGC-UGCaaaCCGGCuCUGCg--UGG- -5'
5144 3' -56.4 NC_001798.1 + 4200 0.66 0.9246
Target:  5'- cGCGgCGugGUcugcggcgcUGGCgGGGGCGCGg- -3'
miRNA:   3'- -CGCgGCugCAa--------ACCGgCUCUGCGUgg -5'
5144 3' -56.4 NC_001798.1 + 123932 0.66 0.9246
Target:  5'- uGUGCCcugggucCGgg-GGCCuGGugGCACCu -3'
miRNA:   3'- -CGCGGcu-----GCaaaCCGGcUCugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 30754 0.66 0.919162
Target:  5'- -gGaCCcGCGUggaGGCCGAGGCG-GCCg -3'
miRNA:   3'- cgC-GGcUGCAaa-CCGGCUCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 23357 0.66 0.919162
Target:  5'- cCGCCGGCGcucGGCCGccucuGACuCAUCa -3'
miRNA:   3'- cGCGGCUGCaaaCCGGCu----CUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 19499 0.66 0.919162
Target:  5'- cCGCUGGCcgUUGGCgaCGAGugGCcuCCg -3'
miRNA:   3'- cGCGGCUGcaAACCG--GCUCugCGu-GG- -5'
5144 3' -56.4 NC_001798.1 + 101775 0.66 0.9246
Target:  5'- cGCuGCUGGCGUUaacuaaGGCCcGGccucCGCGCCg -3'
miRNA:   3'- -CG-CGGCUGCAAa-----CCGGcUCu---GCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 119375 0.66 0.9246
Target:  5'- gGCGCUGGuCGccUGGCU--GGCGCACg -3'
miRNA:   3'- -CGCGGCU-GCaaACCGGcuCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 151621 0.66 0.9246
Target:  5'- cGgGCCGGgGgcgUGGCCGcguccaucAGGCcCGCCu -3'
miRNA:   3'- -CgCGGCUgCaa-ACCGGC--------UCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 134276 0.66 0.926711
Target:  5'- aGCGCCaGACG---GGCCGguGGGCccucuucgucccgcuGCGCCu -3'
miRNA:   3'- -CGCGG-CUGCaaaCCGGC--UCUG---------------CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 73 0.66 0.926711
Target:  5'- gGCGgCGGCGgc-GGgCGGGcggcagggcagccccGCGCGCCc -3'
miRNA:   3'- -CGCgGCUGCaaaCCgGCUC---------------UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 139552 0.66 0.9246
Target:  5'- cGCGCCuGCag-UGGuuCCGGGACGUggcgGCCu -3'
miRNA:   3'- -CGCGGcUGcaaACC--GGCUCUGCG----UGG- -5'
5144 3' -56.4 NC_001798.1 + 128590 0.66 0.9246
Target:  5'- cGCGCgGACGcg-GGCgucaaCGAcGACGCcgacGCCg -3'
miRNA:   3'- -CGCGgCUGCaaaCCG-----GCU-CUGCG----UGG- -5'
5144 3' -56.4 NC_001798.1 + 97540 0.66 0.9246
Target:  5'- gGCGgaGGCGUggcGCgGGGACGC-CCg -3'
miRNA:   3'- -CGCggCUGCAaacCGgCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 72466 0.66 0.9246
Target:  5'- cCGCCuGuACGccgUGGUCGcAGACGC-CCa -3'
miRNA:   3'- cGCGG-C-UGCaa-ACCGGC-UCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 47667 0.66 0.9246
Target:  5'- cCGCCG-CGgcgcUGGcCCGAuGCGCGCg -3'
miRNA:   3'- cGCGGCuGCaa--ACC-GGCUcUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 27955 0.66 0.9246
Target:  5'- cGCGCCccGGCGcuccaGCCGuGcCGCGCCc -3'
miRNA:   3'- -CGCGG--CUGCaaac-CGGCuCuGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.