miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 73 0.66 0.926711
Target:  5'- gGCGgCGGCGgc-GGgCGGGcggcagggcagccccGCGCGCCc -3'
miRNA:   3'- -CGCgGCUGCaaaCCgGCUC---------------UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 174 0.67 0.87477
Target:  5'- cGCGCCG-CGg--GGCUGccuucccgcGGGCGCcCCc -3'
miRNA:   3'- -CGCGGCuGCaaaCCGGC---------UCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 1296 0.7 0.71938
Target:  5'- cGCGUCGcCGUcgGGCuCGAGcaGCGC-CCg -3'
miRNA:   3'- -CGCGGCuGCAaaCCG-GCUC--UGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 1390 0.75 0.45549
Target:  5'- aGCGCC-ACGUagacgGGCCGcagcGGCGCGCCc -3'
miRNA:   3'- -CGCGGcUGCAaa---CCGGCu---CUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 1503 0.66 0.907597
Target:  5'- cGCGCCcgaGGCGgcggcccGGCCGuccaGCGCCg -3'
miRNA:   3'- -CGCGG---CUGCaaa----CCGGCucugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 1607 0.66 0.907597
Target:  5'- cGCGguaCCGcACG-UUGGCCccgcggcaGAGGCGCAgCg -3'
miRNA:   3'- -CGC---GGC-UGCaAACCGG--------CUCUGCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 2209 0.73 0.559958
Target:  5'- cCGCgCGGCGcagcgGGcCCGAGGCGCGCa -3'
miRNA:   3'- cGCG-GCUGCaaa--CC-GGCUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 2258 0.71 0.679939
Target:  5'- cGCGCCGcCGgg-GGgCGGGGCgGCGCa -3'
miRNA:   3'- -CGCGGCuGCaaaCCgGCUCUG-CGUGg -5'
5144 3' -56.4 NC_001798.1 + 2418 0.81 0.213511
Target:  5'- gGCGCCGGCGUgUGGCUGGGccccggcggcugGCgGCGCCa -3'
miRNA:   3'- -CGCGGCUGCAaACCGGCUC------------UG-CGUGG- -5'
5144 3' -56.4 NC_001798.1 + 2485 0.67 0.888557
Target:  5'- cGgGCCGGCGggucaGcGCCGcgGGGCGCGgCg -3'
miRNA:   3'- -CgCGGCUGCaaa--C-CGGC--UCUGCGUgG- -5'
5144 3' -56.4 NC_001798.1 + 2529 0.72 0.639889
Target:  5'- gGCGUCGGCGg--GGCgGgGGGCGCgGCCc -3'
miRNA:   3'- -CGCGGCUGCaaaCCGgC-UCUGCG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 2618 0.72 0.629842
Target:  5'- gGCGCCGcccgGCGgcgcccUGGCCGGGGCGgGgCu -3'
miRNA:   3'- -CGCGGC----UGCaa----ACCGGCUCUGCgUgG- -5'
5144 3' -56.4 NC_001798.1 + 2708 0.67 0.888557
Target:  5'- cGCGgCGACGgugucGGCCagcagGGGGCGCAg- -3'
miRNA:   3'- -CGCgGCUGCaaa--CCGG-----CUCUGCGUgg -5'
5144 3' -56.4 NC_001798.1 + 2969 0.72 0.629842
Target:  5'- cGCGUCGGCGUgcGG-CGGGGCG-GCCg -3'
miRNA:   3'- -CGCGGCUGCAaaCCgGCUCUGCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 3267 0.7 0.758605
Target:  5'- -aGCCGGCGggcaccgcgcgcucgUcGGCCGGcGACGcCGCCg -3'
miRNA:   3'- cgCGGCUGCa--------------AaCCGGCU-CUGC-GUGG- -5'
5144 3' -56.4 NC_001798.1 + 3709 0.66 0.901474
Target:  5'- cGCGuCCGGCGUguacagcaGCCGcgugaucaGGGCGUACUg -3'
miRNA:   3'- -CGC-GGCUGCAaac-----CGGC--------UCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 3773 0.71 0.659957
Target:  5'- gGCGCCcacACGg--GcGCCGGGGCGC-CCg -3'
miRNA:   3'- -CGCGGc--UGCaaaC-CGGCUCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 3885 0.66 0.919162
Target:  5'- cGCGCCccgggGGCGgggGGCCGGcccCGgGCCa -3'
miRNA:   3'- -CGCGG-----CUGCaaaCCGGCUcu-GCgUGG- -5'
5144 3' -56.4 NC_001798.1 + 3973 0.69 0.772534
Target:  5'- cGCGUCGGCGUccagcucgaccGCCGGGGC-CGCCc -3'
miRNA:   3'- -CGCGGCUGCAaac--------CGGCUCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 4082 0.71 0.689877
Target:  5'- uCGCCG-CGgggguccgGGCCGGGGCGgGCUc -3'
miRNA:   3'- cGCGGCuGCaaa-----CCGGCUCUGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.