miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5144 3' -56.4 NC_001798.1 + 154512 0.67 0.87477
Target:  5'- cGCGCCG-CGg--GGCUGccuucccgcGGGCGCcCCc -3'
miRNA:   3'- -CGCGGCuGCaaaCCGGC---------UCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 154411 0.66 0.926711
Target:  5'- gGCGgCGGCGgc-GGgCGGGcggcagggcagccccGCGCGCCc -3'
miRNA:   3'- -CGCgGCUGCaaaCCgGCUC---------------UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 154070 0.72 0.619797
Target:  5'- aGCGCCGgggcgcggcACGgcUGgagcGCCGGGGCGCgGCCg -3'
miRNA:   3'- -CGCGGC---------UGCaaAC----CGGCUCUGCG-UGG- -5'
5144 3' -56.4 NC_001798.1 + 153753 0.66 0.919162
Target:  5'- aGCGCC-AgGUggGGCgGAagggGGCGCugCg -3'
miRNA:   3'- -CGCGGcUgCAaaCCGgCU----CUGCGugG- -5'
5144 3' -56.4 NC_001798.1 + 153701 0.78 0.310507
Target:  5'- cCGCCGGCGca-GGCUcAGGCGCGCCa -3'
miRNA:   3'- cGCGGCUGCaaaCCGGcUCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 153665 0.7 0.748234
Target:  5'- cGCGCgGcGCGUccgcgGGCgGGGACGCggggGCCg -3'
miRNA:   3'- -CGCGgC-UGCAaa---CCGgCUCUGCG----UGG- -5'
5144 3' -56.4 NC_001798.1 + 153420 0.68 0.84473
Target:  5'- cGCGCCcagGAccccCGUcgGGCC-AGGCGCGCg -3'
miRNA:   3'- -CGCGG---CU----GCAaaCCGGcUCUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 153221 0.67 0.88177
Target:  5'- cGC-CCGACGgcccgGGCCcgcggcggcgGAGgacccGCGCGCCg -3'
miRNA:   3'- -CGcGGCUGCaaa--CCGG----------CUC-----UGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 153039 0.69 0.803058
Target:  5'- cGCGgCGGCGcgcggUUGGCCGGcGC-CGCCc -3'
miRNA:   3'- -CGCgGCUGCa----AACCGGCUcUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 152942 0.7 0.748234
Target:  5'- uGCGCgggGAUGgc-GGCCGGGAC-CGCCu -3'
miRNA:   3'- -CGCGg--CUGCaaaCCGGCUCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 152650 0.73 0.540331
Target:  5'- cCGCCGGCGc--GGCCcuGAGugGUGCCc -3'
miRNA:   3'- cGCGGCUGCaaaCCGG--CUCugCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 151621 0.66 0.9246
Target:  5'- cGgGCCGGgGgcgUGGCCGcguccaucAGGCcCGCCu -3'
miRNA:   3'- -CgCGGCUgCaa-ACCGGC--------UCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 151578 0.7 0.738703
Target:  5'- cGCGUCGGCGggcguggGGCUGcccuGGCGCucgGCCg -3'
miRNA:   3'- -CGCGGCUGCaaa----CCGGCu---CUGCG---UGG- -5'
5144 3' -56.4 NC_001798.1 + 150849 0.68 0.811721
Target:  5'- gGCGCCGgucgggucGCGgcgGGCUGGGAgGUuCCg -3'
miRNA:   3'- -CGCGGC--------UGCaaaCCGGCUCUgCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 150465 0.7 0.757667
Target:  5'- -gGCCGcGCGgg-GGCgCGcGGCGCGCCc -3'
miRNA:   3'- cgCGGC-UGCaaaCCG-GCuCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 150426 0.67 0.86756
Target:  5'- gGCGgCGGCGcggGGCgGAcuccgGACGCGCg -3'
miRNA:   3'- -CGCgGCUGCaaaCCGgCU-----CUGCGUGg -5'
5144 3' -56.4 NC_001798.1 + 149972 0.71 0.64993
Target:  5'- aCGCCGACGg--GGgCGcGGCGC-CCg -3'
miRNA:   3'- cGCGGCUGCaaaCCgGCuCUGCGuGG- -5'
5144 3' -56.4 NC_001798.1 + 149663 0.68 0.852534
Target:  5'- gGCGCCGggucGCGggccccgGGCuCGGGGC-CGCCc -3'
miRNA:   3'- -CGCGGC----UGCaaa----CCG-GCUCUGcGUGG- -5'
5144 3' -56.4 NC_001798.1 + 149251 0.7 0.748234
Target:  5'- gGCGUCGcCGgccGGCgCG-GGCGCGCCc -3'
miRNA:   3'- -CGCGGCuGCaaaCCG-GCuCUGCGUGG- -5'
5144 3' -56.4 NC_001798.1 + 148171 0.67 0.87477
Target:  5'- uGUGUCGugGUg-GGCCGuguuGugGUggGCCg -3'
miRNA:   3'- -CGCGGCugCAaaCCGGCu---CugCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.