miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 119520 0.67 0.999963
Target:  5'- gGCAGGcgUguuGGGAAGGGACcCGCGGa -3'
miRNA:   3'- -CGUUUuaGgu-UUUUUCCCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 44835 0.67 0.999963
Target:  5'- uGCGAA--CCcGGAGGGGGugGgGUGGg -3'
miRNA:   3'- -CGUUUuaGGuUUUUUCCCugCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 27311 0.67 0.999963
Target:  5'- gGCGGGAUggaggggaGGGAGGGGGugGCGgGGa -3'
miRNA:   3'- -CGUUUUAgg------UUUUUUCCCugCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 142836 0.67 0.99995
Target:  5'- gGUAGGGggaaaAGAAAGGGGACG-GCGGg -3'
miRNA:   3'- -CGUUUUagg--UUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 88609 0.67 0.99995
Target:  5'- aGCuuGAUCgGGGGGAGGaacaGCGCGCGc -3'
miRNA:   3'- -CGuuUUAGgUUUUUUCCc---UGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 47051 0.68 0.9998
Target:  5'- gGCGuuAUC------GGGGACGCGCAa -3'
miRNA:   3'- -CGUuuUAGguuuuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 28773 0.68 0.999742
Target:  5'- cGCGGAGga-GGAGGAGGcggcggcggcGGCGCGCGGg -3'
miRNA:   3'- -CGUUUUaggUUUUUUCC----------CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 2549 0.68 0.999742
Target:  5'- cGCGGcccCCGcgGGAGGGGCGgcCGCGGg -3'
miRNA:   3'- -CGUUuuaGGUuuUUUCCCUGC--GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 100728 0.68 0.999742
Target:  5'- cGCGuucUUCGAGGGGaugggggacuuGGGGCGCGCGGu -3'
miRNA:   3'- -CGUuuuAGGUUUUUU-----------CCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 148261 0.68 0.999742
Target:  5'- cGCAg---CCAggguAAGGAGGGGCGgGCGu -3'
miRNA:   3'- -CGUuuuaGGU----UUUUUCCCUGCgCGUc -5'
5145 3' -45.5 NC_001798.1 + 139361 0.68 0.9998
Target:  5'- gGCGGcGUCCGGcgGGGaGGGCuCGCGGg -3'
miRNA:   3'- -CGUUuUAGGUUuuUUC-CCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 5261 0.68 0.999845
Target:  5'- gGCGGGGggaAAGGAGGaGGACGCGgAGg -3'
miRNA:   3'- -CGUUUUaggUUUUUUC-CCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 16182 0.68 0.999882
Target:  5'- cGCGGGGaCCG---GGGGGACGCaCGGg -3'
miRNA:   3'- -CGUUUUaGGUuuuUUCCCUGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 6783 0.68 0.999882
Target:  5'- cGCgGAGAUCCAuAAAAGGGaACGgGaGGa -3'
miRNA:   3'- -CG-UUUUAGGUuUUUUCCC-UGCgCgUC- -5'
5145 3' -45.5 NC_001798.1 + 133586 0.68 0.999882
Target:  5'- cGCAGAcguuUCCcGGGgcGGGGCGCGUu- -3'
miRNA:   3'- -CGUUUu---AGGuUUUuuCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 110217 0.68 0.999882
Target:  5'- ------aCCugcGAAGGGcACGCGCGGg -3'
miRNA:   3'- cguuuuaGGuuuUUUCCC-UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 69505 0.68 0.999849
Target:  5'- cGCAGGAcgcgCCGGAGcGGGGcguggcccgcgagcuCGCGCGGg -3'
miRNA:   3'- -CGUUUUa---GGUUUUuUCCCu--------------GCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 76428 0.69 0.999671
Target:  5'- cGCAAGccCCuGGAAGAGcuGGCGCGCAGc -3'
miRNA:   3'- -CGUUUuaGG-UUUUUUCc-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 96087 0.69 0.999583
Target:  5'- cGCAucAGUCCGcgc--GGGGCGCGCc- -3'
miRNA:   3'- -CGUu-UUAGGUuuuuuCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 145363 0.69 0.999671
Target:  5'- cGCAcacgugauAGGUCUugGGAAcccGAGGGGCGaCGCGGg -3'
miRNA:   3'- -CGU--------UUUAGG--UUUU---UUCCCUGC-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.