miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 100969 0.66 0.999993
Target:  5'- uCAAGAcuUCCGAccccGGGGGCGUggGCGGg -3'
miRNA:   3'- cGUUUU--AGGUUuuu-UCCCUGCG--CGUC- -5'
5145 3' -45.5 NC_001798.1 + 48762 0.66 0.999993
Target:  5'- cGCGAGAUgUCAGuccucGGGGACGCaCGGc -3'
miRNA:   3'- -CGUUUUA-GGUUuuu--UCCCUGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 66303 0.66 0.999993
Target:  5'- cGCAuccauUCCucAAAGGAGgccucccggguacGGAUGCGCAGg -3'
miRNA:   3'- -CGUuuu--AGG--UUUUUUC-------------CCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 90375 0.66 0.99999
Target:  5'- uCGAGGuUCCGAAcgccGucGGGGgGCGCGGu -3'
miRNA:   3'- cGUUUU-AGGUUU----UuuCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 58277 0.67 0.99995
Target:  5'- aGCAGcgGGUCCGuGAGGucccGGGGCGCGaGGg -3'
miRNA:   3'- -CGUU--UUAGGUuUUUU----CCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 143800 0.67 0.99995
Target:  5'- aGCAuaAAGaCCAGGcccGGGcGGCGCGCGGc -3'
miRNA:   3'- -CGU--UUUaGGUUUuu-UCC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 54906 0.67 0.99994
Target:  5'- cGCAGAuUCCAuuuacGAGucggugggcgaggauGGGGGGCGCGUc- -3'
miRNA:   3'- -CGUUUuAGGU-----UUU---------------UUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 15242 0.67 0.999932
Target:  5'- uGCGucuuuGGGUCCGuuGGGGGGguACGgGCGGu -3'
miRNA:   3'- -CGU-----UUUAGGUuuUUUCCC--UGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 66785 0.67 0.999932
Target:  5'- cGCGGAAUCgGAGuc-GGccGACGCGCGc -3'
miRNA:   3'- -CGUUUUAGgUUUuuuCC--CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 146022 0.67 0.999932
Target:  5'- cCAAAcagCCAAGGcgcgguGGGGGGCGUGguGg -3'
miRNA:   3'- cGUUUua-GGUUUU------UUCCCUGCGCguC- -5'
5145 3' -45.5 NC_001798.1 + 60868 0.67 0.99991
Target:  5'- cGCGuccUCC-GAAGGGGGGCG-GCGGc -3'
miRNA:   3'- -CGUuuuAGGuUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 88609 0.67 0.99995
Target:  5'- aGCuuGAUCgGGGGGAGGaacaGCGCGCGc -3'
miRNA:   3'- -CGuuUUAGgUUUUUUCCc---UGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 142836 0.67 0.99995
Target:  5'- gGUAGGGggaaaAGAAAGGGGACG-GCGGg -3'
miRNA:   3'- -CGUUUUagg--UUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 27311 0.67 0.999963
Target:  5'- gGCGGGAUggaggggaGGGAGGGGGugGCGgGGa -3'
miRNA:   3'- -CGUUUUAgg------UUUUUUCCCugCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 44835 0.67 0.999963
Target:  5'- uGCGAA--CCcGGAGGGGGugGgGUGGg -3'
miRNA:   3'- -CGUUUuaGGuUUUUUCCCugCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 119520 0.67 0.999963
Target:  5'- gGCAGGcgUguuGGGAAGGGACcCGCGGa -3'
miRNA:   3'- -CGUUUuaGgu-UUUUUCCCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 121927 0.67 0.999963
Target:  5'- cGCGcuGGUCCAGc---GGGcCGUGCAGg -3'
miRNA:   3'- -CGUu-UUAGGUUuuuuCCCuGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 4853 0.67 0.999973
Target:  5'- gGCGAcGGUCCGGGuucGGGGugG-GCGGc -3'
miRNA:   3'- -CGUU-UUAGGUUUuu-UCCCugCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 22391 0.67 0.999973
Target:  5'- gGCGGAAccCCGgcGAGccGGGGCGCGgCGGc -3'
miRNA:   3'- -CGUUUUa-GGU--UUUuuCCCUGCGC-GUC- -5'
5145 3' -45.5 NC_001798.1 + 54367 0.67 0.99991
Target:  5'- cGCGGcGUCCGGcccaccGGGGGGCcgcgGCGCGGu -3'
miRNA:   3'- -CGUUuUAGGUUuu----UUCCCUG----CGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.