miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 147496 0.72 0.992983
Target:  5'- cCAGGcUCCGGGGGGGGGGgGCGCc- -3'
miRNA:   3'- cGUUUuAGGUUUUUUCCCUgCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 142156 0.72 0.992983
Target:  5'- uGCAcguGUuuGAGucAGGGACGCGCGc -3'
miRNA:   3'- -CGUuu-UAggUUUuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 3423 0.72 0.992983
Target:  5'- cGCGcg--CCAGc--AGGGGCGCGUAGg -3'
miRNA:   3'- -CGUuuuaGGUUuuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 13161 0.72 0.994838
Target:  5'- cGCGGucUCgAAGGcGGGGGCGUGCAu -3'
miRNA:   3'- -CGUUuuAGgUUUUuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 117664 0.72 0.994838
Target:  5'- uGCAAc--CCGc---GGGGACGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUuuuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 79136 0.72 0.994838
Target:  5'- cGCGGAggCCGugGAGGAGcuGGGCGCGCGc -3'
miRNA:   3'- -CGUUUuaGGU--UUUUUC--CCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 36613 0.71 0.995604
Target:  5'- nGCGg---CCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUuuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 40503 0.71 0.996274
Target:  5'- uGCuggg-CCGGGGGAGGGGCaaGCAGa -3'
miRNA:   3'- -CGuuuuaGGUUUUUUCCCUGcgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 128414 0.71 0.996577
Target:  5'- gGCGGGGccugacgaccgccUCCAcgcugcgguGGGGCGCGCAGg -3'
miRNA:   3'- -CGUUUU-------------AGGUuuuuu----CCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 106489 0.71 0.996858
Target:  5'- cCGAGGUCCAcuucgcauAuuAAGGuGACGCGCGu -3'
miRNA:   3'- cGUUUUAGGU--------UuuUUCC-CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 153667 0.71 0.996858
Target:  5'- cGCGGcgcGUCCGcgGGcGGGGACGCGgGGg -3'
miRNA:   3'- -CGUUu--UAGGUuuUU-UCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 86136 0.71 0.996858
Target:  5'- aGC-GAGUCCuGGGAAgcgcaccgcGGGGCGCGCAu -3'
miRNA:   3'- -CGuUUUAGGuUUUUU---------CCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 5234 0.71 0.996858
Target:  5'- gGCugauauAGUCCuc----GGGGCGCGCGGg -3'
miRNA:   3'- -CGuu----UUAGGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 41736 0.71 0.996858
Target:  5'- gGCAAAGcacugCUGAcacAGGGACGCGCAu -3'
miRNA:   3'- -CGUUUUa----GGUUuuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 57547 0.7 0.997801
Target:  5'- gGCGGAugcguUCCGc---GGGGACGCGgAGg -3'
miRNA:   3'- -CGUUUu----AGGUuuuuUCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 40182 0.7 0.997801
Target:  5'- gGCcGGGUCCGAAucGAGGagcggcaccGACGCGCAa -3'
miRNA:   3'- -CGuUUUAGGUUUu-UUCC---------CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 135235 0.7 0.997801
Target:  5'- gGCug---CCGGAAGcccGGGGGCGgGCGGg -3'
miRNA:   3'- -CGuuuuaGGUUUUU---UCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 22346 0.7 0.998175
Target:  5'- cGCGGGcgUCGGGGcGGGGcCGCGCAu -3'
miRNA:   3'- -CGUUUuaGGUUUUuUCCCuGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 90138 0.7 0.998494
Target:  5'- cGCAGGAUCCGAgcGAAaacaGGaGGAUGUGCu- -3'
miRNA:   3'- -CGUUUUAGGUU--UUU----UC-CCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 114559 0.7 0.998494
Target:  5'- cGCAAcGUCCAGGccguccuGGGGGCguuugaGCGCGGc -3'
miRNA:   3'- -CGUUuUAGGUUUuu-----UCCCUG------CGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.