miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 125507 1.12 0.02138
Target:  5'- gGCAAAAUCCAAAAAAGGGACGCGCAGc -3'
miRNA:   3'- -CGUUUUAGGUUUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 27571 0.79 0.866603
Target:  5'- cGCGGGGgagcggccggcUCCGggggagggacggGGAAGGGGGCGCGCGGg -3'
miRNA:   3'- -CGUUUU-----------AGGU------------UUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 99326 0.78 0.882243
Target:  5'- uGCAucg-UCGAGGAGGuGGACGCGCGGu -3'
miRNA:   3'- -CGUuuuaGGUUUUUUC-CCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 125693 0.77 0.916734
Target:  5'- gGCGAAggaGUCCGAcGucGGGcGCGCGCGGg -3'
miRNA:   3'- -CGUUU---UAGGUUuUuuCCC-UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 17966 0.76 0.944337
Target:  5'- cGC-AGGUCCGGAcgucgGGGGGGGCuGCGCGGc -3'
miRNA:   3'- -CGuUUUAGGUUU-----UUUCCCUG-CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 153022 0.76 0.944337
Target:  5'- gGCGGAGUCCGGGcccgcgcGGcGGCGCGCGGu -3'
miRNA:   3'- -CGUUUUAGGUUUuuu----CC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 36504 0.76 0.953451
Target:  5'- cGCGGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUUua-GGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 49253 0.75 0.965141
Target:  5'- aGCGAcguGAUCgAcuGGGGGGAUGCGCAc -3'
miRNA:   3'- -CGUU---UUAGgUuuUUUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 36589 0.75 0.968531
Target:  5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 36547 0.75 0.968531
Target:  5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 146685 0.74 0.971681
Target:  5'- ------cCCAcguuGGGGGGGGGCGCGCAGc -3'
miRNA:   3'- cguuuuaGGU----UUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 87370 0.74 0.974597
Target:  5'- uGCAcacGAUCCugcgcGGAGGGGGGGCGUGCGa -3'
miRNA:   3'- -CGUu--UUAGG-----UUUUUUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 13037 0.74 0.979763
Target:  5'- gGCAcgcugCCG---GGGGGAUGCGCAGg -3'
miRNA:   3'- -CGUuuua-GGUuuuUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 40143 0.74 0.979763
Target:  5'- gGCGGGuGUCCuccGAGGGGGCGCGUg- -3'
miRNA:   3'- -CGUUU-UAGGuuuUUUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 150439 0.73 0.984104
Target:  5'- gGCGGAcUCCGGAcgcgcggggcGAcggccgcgcGGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUUuAGGUUU----------UU---------UCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 30939 0.73 0.984104
Target:  5'- gGCGGGggUCGGGcgGGGGGCGgGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUuuUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 20384 0.73 0.98488
Target:  5'- cGCAGGAUCCGAAAGAGcugguuGACGCacuggcguauguaauGCAGa -3'
miRNA:   3'- -CGUUUUAGGUUUUUUCc-----CUGCG---------------CGUC- -5'
5145 3' -45.5 NC_001798.1 + 52220 0.73 0.988796
Target:  5'- aGCAGAcgGUCCAGugGcucucgguggucguGGGGGCGCGCc- -3'
miRNA:   3'- -CGUUU--UAGGUUuuU--------------UCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 88738 0.73 0.989243
Target:  5'- cGCAugGAGUaCGGAccGGGGGCGCGCAu -3'
miRNA:   3'- -CGU--UUUAgGUUUuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 31334 0.72 0.990631
Target:  5'- uGCGg---CCGGcgGGGGGcGCGCGCAGg -3'
miRNA:   3'- -CGUuuuaGGUUuuUUCCC-UGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.