miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 2258 0.69 0.999583
Target:  5'- cGCGccg-CCGGGGGGcGGGGCGgCGCAGc -3'
miRNA:   3'- -CGUuuuaGGUUUUUU-CCCUGC-GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 2549 0.68 0.999742
Target:  5'- cGCGGcccCCGcgGGAGGGGCGgcCGCGGg -3'
miRNA:   3'- -CGUUuuaGGUuuUUUCCCUGC--GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 2998 0.69 0.999184
Target:  5'- cGCGGGccCCGGGcgcGGGGGCGCgGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUuu-UCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 3423 0.72 0.992983
Target:  5'- cGCGcg--CCAGc--AGGGGCGCGUAGg -3'
miRNA:   3'- -CGUuuuaGGUUuuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 4355 0.7 0.998765
Target:  5'- cCGAGcgCCGGc-GGGGGGCGCGCc- -3'
miRNA:   3'- cGUUUuaGGUUuuUUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 4853 0.67 0.999973
Target:  5'- gGCGAcGGUCCGGGuucGGGGugG-GCGGc -3'
miRNA:   3'- -CGUU-UUAGGUUUuu-UCCCugCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 4890 0.67 0.99991
Target:  5'- gGCuGGAUCCGGAGAuccGGGGcCGC-CGGu -3'
miRNA:   3'- -CGuUUUAGGUUUUU---UCCCuGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 5234 0.71 0.996858
Target:  5'- gGCugauauAGUCCuc----GGGGCGCGCGGg -3'
miRNA:   3'- -CGuu----UUAGGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 5261 0.68 0.999845
Target:  5'- gGCGGGGggaAAGGAGGaGGACGCGgAGg -3'
miRNA:   3'- -CGUUUUaggUUUUUUC-CCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 5615 0.66 0.99999
Target:  5'- cGCGGGcggcUCCGccccAAAGGGGGCGgggcCGCAGg -3'
miRNA:   3'- -CGUUUu---AGGUu---UUUUCCCUGC----GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 6226 0.67 0.99991
Target:  5'- cCGGGGggCCGGccGGGGGGACGgGCGGg -3'
miRNA:   3'- cGUUUUa-GGUUu-UUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 6783 0.68 0.999882
Target:  5'- cGCgGAGAUCCAuAAAAGGGaACGgGaGGa -3'
miRNA:   3'- -CG-UUUUAGGUuUUUUCCC-UGCgCgUC- -5'
5145 3' -45.5 NC_001798.1 + 7800 0.66 0.999993
Target:  5'- gGCGGGAgCCAGGGucGgacaGGAgGCGCAGc -3'
miRNA:   3'- -CGUUUUaGGUUUUuuC----CCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 13037 0.74 0.979763
Target:  5'- gGCAcgcugCCG---GGGGGAUGCGCAGg -3'
miRNA:   3'- -CGUuuua-GGUuuuUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 13161 0.72 0.994838
Target:  5'- cGCGGucUCgAAGGcGGGGGCGUGCAu -3'
miRNA:   3'- -CGUUuuAGgUUUUuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 15051 0.69 0.999343
Target:  5'- gGCGGAugggCCc-----GGGGCGCGCGGg -3'
miRNA:   3'- -CGUUUua--GGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 15242 0.67 0.999932
Target:  5'- uGCGucuuuGGGUCCGuuGGGGGGguACGgGCGGu -3'
miRNA:   3'- -CGU-----UUUAGGUuuUUUCCC--UGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 15444 0.66 0.999986
Target:  5'- cCGGAGUCguGGGgcGGGGGGuCGCGUGGg -3'
miRNA:   3'- cGUUUUAGguUUU--UUCCCU-GCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 16182 0.68 0.999882
Target:  5'- cGCGGGGaCCG---GGGGGACGCaCGGg -3'
miRNA:   3'- -CGUUUUaGGUuuuUUCCCUGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 16864 0.69 0.999583
Target:  5'- gGCAAGGUgCCAAAAacaccaaagcccGAGGGcCGCGUc- -3'
miRNA:   3'- -CGUUUUA-GGUUUU------------UUCCCuGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.