miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 153744 0.69 0.999184
Target:  5'- cGCAgccguAGcgCCAGguggggcgGAAGGGGGCGCuGCGGc -3'
miRNA:   3'- -CGU-----UUuaGGUU--------UUUUCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 153667 0.71 0.996858
Target:  5'- cGCGGcgcGUCCGcgGGcGGGGACGCGgGGg -3'
miRNA:   3'- -CGUUu--UAGGUuuUU-UCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 153022 0.76 0.944337
Target:  5'- gGCGGAGUCCGGGcccgcgcGGcGGCGCGCGGu -3'
miRNA:   3'- -CGUUUUAGGUUUuuu----CC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 150439 0.73 0.984104
Target:  5'- gGCGGAcUCCGGAcgcgcggggcGAcggccgcgcGGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUUuAGGUUU----------UU---------UCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 150029 0.69 0.999583
Target:  5'- cGCccGAGUCCGAGuccGGGGCccgGCGCGGc -3'
miRNA:   3'- -CGu-UUUAGGUUUuuuCCCUG---CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 148261 0.68 0.999742
Target:  5'- cGCAg---CCAggguAAGGAGGGGCGgGCGu -3'
miRNA:   3'- -CGUuuuaGGU----UUUUUCCCUGCgCGUc -5'
5145 3' -45.5 NC_001798.1 + 147613 0.66 0.999993
Target:  5'- gGCGGGGagagGGGGGGGGGGCGgGCGGa -3'
miRNA:   3'- -CGUUUUagg-UUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 147496 0.72 0.992983
Target:  5'- cCAGGcUCCGGGGGGGGGGgGCGCc- -3'
miRNA:   3'- cGUUUuAGGUUUUUUCCCUgCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 146685 0.74 0.971681
Target:  5'- ------cCCAcguuGGGGGGGGGCGCGCAGc -3'
miRNA:   3'- cguuuuaGGU----UUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 146082 0.66 0.99999
Target:  5'- -aGGGGUCCGGGgcGAGGcGGGCGgGCGa -3'
miRNA:   3'- cgUUUUAGGUUU--UUUC-CCUGCgCGUc -5'
5145 3' -45.5 NC_001798.1 + 146022 0.67 0.999932
Target:  5'- cCAAAcagCCAAGGcgcgguGGGGGGCGUGguGg -3'
miRNA:   3'- cGUUUua-GGUUUU------UUCCCUGCGCguC- -5'
5145 3' -45.5 NC_001798.1 + 145784 0.7 0.998494
Target:  5'- cCGGGGUCCAcac-AGGaGCGCGCGGg -3'
miRNA:   3'- cGUUUUAGGUuuuuUCCcUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 145363 0.69 0.999671
Target:  5'- cGCAcacgugauAGGUCUugGGAAcccGAGGGGCGaCGCGGg -3'
miRNA:   3'- -CGU--------UUUAGG--UUUU---UUCCCUGC-GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 143800 0.67 0.99995
Target:  5'- aGCAuaAAGaCCAGGcccGGGcGGCGCGCGGc -3'
miRNA:   3'- -CGU--UUUaGGUUUuu-UCC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 142836 0.67 0.99995
Target:  5'- gGUAGGGggaaaAGAAAGGGGACG-GCGGg -3'
miRNA:   3'- -CGUUUUagg--UUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 142156 0.72 0.992983
Target:  5'- uGCAcguGUuuGAGucAGGGACGCGCGc -3'
miRNA:   3'- -CGUuu-UAggUUUuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 139361 0.68 0.9998
Target:  5'- gGCGGcGUCCGGcgGGGaGGGCuCGCGGg -3'
miRNA:   3'- -CGUUuUAGGUUuuUUC-CCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 137423 0.66 0.999985
Target:  5'- --cGGGUCCGGGAccGggacccgccccgcGGGGACGCGCu- -3'
miRNA:   3'- cguUUUAGGUUUU--U-------------UCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 136805 0.69 0.999583
Target:  5'- aGCGGAcgCgCucGAAGGGaGACGCGUGGc -3'
miRNA:   3'- -CGUUUuaG-GuuUUUUCC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 136630 0.69 0.999184
Target:  5'- cGCAGAGcUCUGc---GGGGugGCGCAa -3'
miRNA:   3'- -CGUUUU-AGGUuuuuUCCCugCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.