miRNA display CGI


Results 21 - 40 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 17246 0.7 0.998494
Target:  5'- cGCGGGG-CCGAGAAcaaGGACGCGguGu -3'
miRNA:   3'- -CGUUUUaGGUUUUUuc-CCUGCGCguC- -5'
5145 3' -45.5 NC_001798.1 + 17660 0.66 0.99998
Target:  5'- uGC-AGGUCCAGGAGggguaggaucgcGGGGugGUuCAGg -3'
miRNA:   3'- -CGuUUUAGGUUUUU------------UCCCugCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 17966 0.76 0.944337
Target:  5'- cGC-AGGUCCGGAcgucgGGGGGGGCuGCGCGGc -3'
miRNA:   3'- -CGuUUUAGGUUU-----UUUCCCUG-CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 20384 0.73 0.98488
Target:  5'- cGCAGGAUCCGAAAGAGcugguuGACGCacuggcguauguaauGCAGa -3'
miRNA:   3'- -CGUUUUAGGUUUUUUCc-----CUGCG---------------CGUC- -5'
5145 3' -45.5 NC_001798.1 + 22147 0.66 0.999993
Target:  5'- gGCGGGggCCAAc---GGGA-GCGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUuuuuCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 22346 0.7 0.998175
Target:  5'- cGCGGGcgUCGGGGcGGGGcCGCGCAu -3'
miRNA:   3'- -CGUUUuaGGUUUUuUCCCuGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 22391 0.67 0.999973
Target:  5'- gGCGGAAccCCGgcGAGccGGGGCGCGgCGGc -3'
miRNA:   3'- -CGUUUUa-GGU--UUUuuCCCUGCGC-GUC- -5'
5145 3' -45.5 NC_001798.1 + 27187 0.66 0.99998
Target:  5'- cGCGGGcgCgGGGGGAGGGGCGgGgGa -3'
miRNA:   3'- -CGUUUuaGgUUUUUUCCCUGCgCgUc -5'
5145 3' -45.5 NC_001798.1 + 27311 0.67 0.999963
Target:  5'- gGCGGGAUggaggggaGGGAGGGGGugGCGgGGa -3'
miRNA:   3'- -CGUUUUAgg------UUUUUUCCCugCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 27515 0.66 0.999986
Target:  5'- cGCGGGGgcgCCcgcGGGAAGGcagccccgcGGCGCGCGGg -3'
miRNA:   3'- -CGUUUUa--GGu--UUUUUCC---------CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 27571 0.79 0.866603
Target:  5'- cGCGGGGgagcggccggcUCCGggggagggacggGGAAGGGGGCGCGCGGg -3'
miRNA:   3'- -CGUUUU-----------AGGU------------UUUUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 28773 0.68 0.999742
Target:  5'- cGCGGAGga-GGAGGAGGcggcggcggcGGCGCGCGGg -3'
miRNA:   3'- -CGUUUUaggUUUUUUCC----------CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 30154 0.67 0.99991
Target:  5'- gGCGGGGggCCGgggugAGGGAGGGACacgggggacacgGCGCGGg -3'
miRNA:   3'- -CGUUUUa-GGU-----UUUUUCCCUG------------CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 30939 0.73 0.984104
Target:  5'- gGCGGGggUCGGGcgGGGGGCGgGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUuuUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 31334 0.72 0.990631
Target:  5'- uGCGg---CCGGcgGGGGGcGCGCGCAGg -3'
miRNA:   3'- -CGUuuuaGGUUuuUUCCC-UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 34500 0.69 0.999671
Target:  5'- cGCGGcGUUCG----AGGGGCGCGCu- -3'
miRNA:   3'- -CGUUuUAGGUuuuuUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 34680 0.66 0.99999
Target:  5'- -aGGAAg--AGGGAAGGGGCGCgGCGGg -3'
miRNA:   3'- cgUUUUaggUUUUUUCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 36134 0.66 0.999993
Target:  5'- cGCGAucccgCCGGu---GGGGCGCGgCGGc -3'
miRNA:   3'- -CGUUuua--GGUUuuuuCCCUGCGC-GUC- -5'
5145 3' -45.5 NC_001798.1 + 36504 0.76 0.953451
Target:  5'- cGCGGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUUua-GGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 36547 0.75 0.968531
Target:  5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.