Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5145 | 3' | -45.5 | NC_001798.1 | + | 105593 | 0.66 | 0.99998 |
Target: 5'- aGUAcGGGUCCAuguucGAGGGcGGCGgGCGGg -3' miRNA: 3'- -CGU-UUUAGGUuu---UUUCC-CUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 17660 | 0.66 | 0.99998 |
Target: 5'- uGC-AGGUCCAGGAGggguaggaucgcGGGGugGUuCAGg -3' miRNA: 3'- -CGuUUUAGGUUUUU------------UCCCugCGcGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 27187 | 0.66 | 0.99998 |
Target: 5'- cGCGGGcgCgGGGGGAGGGGCGgGgGa -3' miRNA: 3'- -CGUUUuaGgUUUUUUCCCUGCgCgUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 92604 | 0.66 | 0.99998 |
Target: 5'- uGCGAccuaAAgcaCGAGAcgacGGGGGACGCGCu- -3' miRNA: 3'- -CGUU----UUag-GUUUU----UUCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 47905 | 0.67 | 0.999973 |
Target: 5'- cGCGGAcccCCAAAAu---GACGCGCGGg -3' miRNA: 3'- -CGUUUua-GGUUUUuuccCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 22391 | 0.67 | 0.999973 |
Target: 5'- gGCGGAAccCCGgcGAGccGGGGCGCGgCGGc -3' miRNA: 3'- -CGUUUUa-GGU--UUUuuCCCUGCGC-GUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 4853 | 0.67 | 0.999973 |
Target: 5'- gGCGAcGGUCCGGGuucGGGGugG-GCGGc -3' miRNA: 3'- -CGUU-UUAGGUUUuu-UCCCugCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 27311 | 0.67 | 0.999963 |
Target: 5'- gGCGGGAUggaggggaGGGAGGGGGugGCGgGGa -3' miRNA: 3'- -CGUUUUAgg------UUUUUUCCCugCGCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 44835 | 0.67 | 0.999963 |
Target: 5'- uGCGAA--CCcGGAGGGGGugGgGUGGg -3' miRNA: 3'- -CGUUUuaGGuUUUUUCCCugCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 119520 | 0.67 | 0.999963 |
Target: 5'- gGCAGGcgUguuGGGAAGGGACcCGCGGa -3' miRNA: 3'- -CGUUUuaGgu-UUUUUCCCUGcGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 121927 | 0.67 | 0.999963 |
Target: 5'- cGCGcuGGUCCAGc---GGGcCGUGCAGg -3' miRNA: 3'- -CGUu-UUAGGUUuuuuCCCuGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 143800 | 0.67 | 0.99995 |
Target: 5'- aGCAuaAAGaCCAGGcccGGGcGGCGCGCGGc -3' miRNA: 3'- -CGU--UUUaGGUUUuu-UCC-CUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 58277 | 0.67 | 0.99995 |
Target: 5'- aGCAGcgGGUCCGuGAGGucccGGGGCGCGaGGg -3' miRNA: 3'- -CGUU--UUAGGUuUUUU----CCCUGCGCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 88609 | 0.67 | 0.99995 |
Target: 5'- aGCuuGAUCgGGGGGAGGaacaGCGCGCGc -3' miRNA: 3'- -CGuuUUAGgUUUUUUCCc---UGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 142836 | 0.67 | 0.99995 |
Target: 5'- gGUAGGGggaaaAGAAAGGGGACG-GCGGg -3' miRNA: 3'- -CGUUUUagg--UUUUUUCCCUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 54906 | 0.67 | 0.99994 |
Target: 5'- cGCAGAuUCCAuuuacGAGucggugggcgaggauGGGGGGCGCGUc- -3' miRNA: 3'- -CGUUUuAGGU-----UUU---------------UUCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 15242 | 0.67 | 0.999932 |
Target: 5'- uGCGucuuuGGGUCCGuuGGGGGGguACGgGCGGu -3' miRNA: 3'- -CGU-----UUUAGGUuuUUUCCC--UGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 66785 | 0.67 | 0.999932 |
Target: 5'- cGCGGAAUCgGAGuc-GGccGACGCGCGc -3' miRNA: 3'- -CGUUUUAGgUUUuuuCC--CUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 146022 | 0.67 | 0.999932 |
Target: 5'- cCAAAcagCCAAGGcgcgguGGGGGGCGUGguGg -3' miRNA: 3'- cGUUUua-GGUUUU------UUCCCUGCGCguC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 54367 | 0.67 | 0.99991 |
Target: 5'- cGCGGcGUCCGGcccaccGGGGGGCcgcgGCGCGGu -3' miRNA: 3'- -CGUUuUAGGUUuu----UUCCCUG----CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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