Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5145 | 3' | -45.5 | NC_001798.1 | + | 54367 | 0.67 | 0.99991 |
Target: 5'- cGCGGcGUCCGGcccaccGGGGGGCcgcgGCGCGGu -3' miRNA: 3'- -CGUUuUAGGUUuu----UUCCCUG----CGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 30154 | 0.67 | 0.99991 |
Target: 5'- gGCGGGGggCCGgggugAGGGAGGGACacgggggacacgGCGCGGg -3' miRNA: 3'- -CGUUUUa-GGU-----UUUUUCCCUG------------CGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 6226 | 0.67 | 0.99991 |
Target: 5'- cCGGGGggCCGGccGGGGGGACGgGCGGg -3' miRNA: 3'- cGUUUUa-GGUUu-UUUCCCUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 4890 | 0.67 | 0.99991 |
Target: 5'- gGCuGGAUCCGGAGAuccGGGGcCGC-CGGu -3' miRNA: 3'- -CGuUUUAGGUUUUU---UCCCuGCGcGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 79309 | 0.67 | 0.99991 |
Target: 5'- -aGGAGUUCc-----GGGGCGCGCGGg -3' miRNA: 3'- cgUUUUAGGuuuuuuCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 110217 | 0.68 | 0.999882 |
Target: 5'- ------aCCugcGAAGGGcACGCGCGGg -3' miRNA: 3'- cguuuuaGGuuuUUUCCC-UGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 133586 | 0.68 | 0.999882 |
Target: 5'- cGCAGAcguuUCCcGGGgcGGGGCGCGUu- -3' miRNA: 3'- -CGUUUu---AGGuUUUuuCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 6783 | 0.68 | 0.999882 |
Target: 5'- cGCgGAGAUCCAuAAAAGGGaACGgGaGGa -3' miRNA: 3'- -CG-UUUUAGGUuUUUUCCC-UGCgCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 16182 | 0.68 | 0.999882 |
Target: 5'- cGCGGGGaCCG---GGGGGACGCaCGGg -3' miRNA: 3'- -CGUUUUaGGUuuuUUCCCUGCGcGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 69505 | 0.68 | 0.999849 |
Target: 5'- cGCAGGAcgcgCCGGAGcGGGGcguggcccgcgagcuCGCGCGGg -3' miRNA: 3'- -CGUUUUa---GGUUUUuUCCCu--------------GCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 5261 | 0.68 | 0.999845 |
Target: 5'- gGCGGGGggaAAGGAGGaGGACGCGgAGg -3' miRNA: 3'- -CGUUUUaggUUUUUUC-CCUGCGCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 139361 | 0.68 | 0.9998 |
Target: 5'- gGCGGcGUCCGGcgGGGaGGGCuCGCGGg -3' miRNA: 3'- -CGUUuUAGGUUuuUUC-CCUGcGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 47051 | 0.68 | 0.9998 |
Target: 5'- gGCGuuAUC------GGGGACGCGCAa -3' miRNA: 3'- -CGUuuUAGguuuuuUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 148261 | 0.68 | 0.999742 |
Target: 5'- cGCAg---CCAggguAAGGAGGGGCGgGCGu -3' miRNA: 3'- -CGUuuuaGGU----UUUUUCCCUGCgCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 100728 | 0.68 | 0.999742 |
Target: 5'- cGCGuucUUCGAGGGGaugggggacuuGGGGCGCGCGGu -3' miRNA: 3'- -CGUuuuAGGUUUUUU-----------CCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 2549 | 0.68 | 0.999742 |
Target: 5'- cGCGGcccCCGcgGGAGGGGCGgcCGCGGg -3' miRNA: 3'- -CGUUuuaGGUuuUUUCCCUGC--GCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 28773 | 0.68 | 0.999742 |
Target: 5'- cGCGGAGga-GGAGGAGGcggcggcggcGGCGCGCGGg -3' miRNA: 3'- -CGUUUUaggUUUUUUCC----------CUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 34500 | 0.69 | 0.999671 |
Target: 5'- cGCGGcGUUCG----AGGGGCGCGCu- -3' miRNA: 3'- -CGUUuUAGGUuuuuUCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 76428 | 0.69 | 0.999671 |
Target: 5'- cGCAAGccCCuGGAAGAGcuGGCGCGCAGc -3' miRNA: 3'- -CGUUUuaGG-UUUUUUCc-CUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 145363 | 0.69 | 0.999671 |
Target: 5'- cGCAcacgugauAGGUCUugGGAAcccGAGGGGCGaCGCGGg -3' miRNA: 3'- -CGU--------UUUAGG--UUUU---UUCCCUGC-GCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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