miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 36589 0.75 0.968531
Target:  5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 36613 0.71 0.995604
Target:  5'- nGCGg---CCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUuuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 39394 0.7 0.998765
Target:  5'- gGCAGAGggcgccuuucgcUCCGGGAccGGGGCGCGg-- -3'
miRNA:   3'- -CGUUUU------------AGGUUUUuuCCCUGCGCguc -5'
5145 3' -45.5 NC_001798.1 + 40143 0.74 0.979763
Target:  5'- gGCGGGuGUCCuccGAGGGGGCGCGUg- -3'
miRNA:   3'- -CGUUU-UAGGuuuUUUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 40182 0.7 0.997801
Target:  5'- gGCcGGGUCCGAAucGAGGagcggcaccGACGCGCAa -3'
miRNA:   3'- -CGuUUUAGGUUUu-UUCC---------CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 40503 0.71 0.996274
Target:  5'- uGCuggg-CCGGGGGAGGGGCaaGCAGa -3'
miRNA:   3'- -CGuuuuaGGUUUUUUCCCUGcgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 41736 0.71 0.996858
Target:  5'- gGCAAAGcacugCUGAcacAGGGACGCGCAu -3'
miRNA:   3'- -CGUUUUa----GGUUuuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 44835 0.67 0.999963
Target:  5'- uGCGAA--CCcGGAGGGGGugGgGUGGg -3'
miRNA:   3'- -CGUUUuaGGuUUUUUCCCugCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 46001 0.7 0.998765
Target:  5'- -gGGGAUCCAGGGGAGGG-CGUGgGu -3'
miRNA:   3'- cgUUUUAGGUUUUUUCCCuGCGCgUc -5'
5145 3' -45.5 NC_001798.1 + 47051 0.68 0.9998
Target:  5'- gGCGuuAUC------GGGGACGCGCAa -3'
miRNA:   3'- -CGUuuUAGguuuuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 47905 0.67 0.999973
Target:  5'- cGCGGAcccCCAAAAu---GACGCGCGGg -3'
miRNA:   3'- -CGUUUua-GGUUUUuuccCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 48762 0.66 0.999993
Target:  5'- cGCGAGAUgUCAGuccucGGGGACGCaCGGc -3'
miRNA:   3'- -CGUUUUA-GGUUuuu--UCCCUGCGcGUC- -5'
5145 3' -45.5 NC_001798.1 + 49253 0.75 0.965141
Target:  5'- aGCGAcguGAUCgAcuGGGGGGAUGCGCAc -3'
miRNA:   3'- -CGUU---UUAGgUuuUUUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 49631 0.7 0.998494
Target:  5'- cGCGAGAUCCuau---GGGcCGCGUAc -3'
miRNA:   3'- -CGUUUUAGGuuuuuuCCCuGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 50663 0.7 0.998765
Target:  5'- uGCuGGGGUCCGcguauAAAGGcaGGCGCGCGGg -3'
miRNA:   3'- -CG-UUUUAGGUuu---UUUCC--CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 52220 0.73 0.988796
Target:  5'- aGCAGAcgGUCCAGugGcucucgguggucguGGGGGCGCGCc- -3'
miRNA:   3'- -CGUUU--UAGGUUuuU--------------UCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 52864 0.66 0.999986
Target:  5'- aGC-GAGUCCGugcu-GGGGC-CGCGGg -3'
miRNA:   3'- -CGuUUUAGGUuuuuuCCCUGcGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 54367 0.67 0.99991
Target:  5'- cGCGGcGUCCGGcccaccGGGGGGCcgcgGCGCGGu -3'
miRNA:   3'- -CGUUuUAGGUUuu----UUCCCUG----CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 54906 0.67 0.99994
Target:  5'- cGCAGAuUCCAuuuacGAGucggugggcgaggauGGGGGGCGCGUc- -3'
miRNA:   3'- -CGUUUuAGGU-----UUU---------------UUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 57547 0.7 0.997801
Target:  5'- gGCGGAugcguUCCGc---GGGGACGCGgAGg -3'
miRNA:   3'- -CGUUUu----AGGUuuuuUCCCUGCGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.