miRNA display CGI


Results 61 - 80 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 38261 0.67 0.567019
Target:  5'- uGCaGGGCGUUuucGGCCUGCCacGugGCa -3'
miRNA:   3'- gCGgCUCGCAGu--CCGGGCGG--CugCGg -5'
5145 5' -63.7 NC_001798.1 + 134453 0.67 0.566073
Target:  5'- uCGCCGAGCaccccggcgcgcgGUUggcguGGGCgCGCCuGGcCGCCa -3'
miRNA:   3'- -GCGGCUCG-------------CAG-----UCCGgGCGG-CU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 139390 0.67 0.566073
Target:  5'- aCGuCCGGGCacCAGGUCCGCCcccacagcagcccGGgGCCa -3'
miRNA:   3'- -GC-GGCUCGcaGUCCGGGCGG-------------CUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 110991 0.67 0.557577
Target:  5'- aCGCC---CGUCAGGCgCGCgguaugCGugGCCg -3'
miRNA:   3'- -GCGGcucGCAGUCCGgGCG------GCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 3786 0.67 0.557577
Target:  5'- gCGCCgGGGCGcCcgAGGCCUcgaaccggGCCcGCGCCu -3'
miRNA:   3'- -GCGG-CUCGCaG--UCCGGG--------CGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 120613 0.67 0.557577
Target:  5'- cCGCCGAcuuUGUuaggaCGGGCCgGUCGuCGCCg -3'
miRNA:   3'- -GCGGCUc--GCA-----GUCCGGgCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 100668 0.67 0.557577
Target:  5'- uGCCGAcauCGaCAcGGUCauccgCGCCGACGCCa -3'
miRNA:   3'- gCGGCUc--GCaGU-CCGG-----GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 130795 0.67 0.557577
Target:  5'- gCGCCGGGUcaaUCAGGCCgugaacCUGACGCa -3'
miRNA:   3'- -GCGGCUCGc--AGUCCGGgc----GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 83969 0.67 0.557577
Target:  5'- gCGaCGGGCGa-GGGCCUGCuCGGCGgCg -3'
miRNA:   3'- -GCgGCUCGCagUCCGGGCG-GCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 43132 0.67 0.557577
Target:  5'- gCGCgCGucccGCGUCacgcGGGCCCaGUCGucccGCGCCg -3'
miRNA:   3'- -GCG-GCu---CGCAG----UCCGGG-CGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 5385 0.67 0.557577
Target:  5'- gCGuCCGuGGCGgc-GGCCCGuuGgucGCGCCg -3'
miRNA:   3'- -GC-GGC-UCGCaguCCGGGCggC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3306 0.67 0.556635
Target:  5'- cCGCCGAcggcaacggggcgGCGgcggcggCGGGCuucCCGCgGGCGUCg -3'
miRNA:   3'- -GCGGCU-------------CGCa------GUCCG---GGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 75187 0.67 0.555694
Target:  5'- aCGCUGGGgGcccgccgcccccCGGaGCCCcCCGGCGCCg -3'
miRNA:   3'- -GCGGCUCgCa-----------GUC-CGGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 152618 0.67 0.554753
Target:  5'- cCGCCGAcGCaGaUGGGaguccccccggcgcCCCGCCGGCGCg -3'
miRNA:   3'- -GCGGCU-CG-CaGUCC--------------GGGCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 109624 0.67 0.553812
Target:  5'- gGCCGcGCG-CuaaccgccccgauGGUCCGCCGAgCGCUg -3'
miRNA:   3'- gCGGCuCGCaGu------------CCGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 2073 0.67 0.549118
Target:  5'- cCGCCGcgcucGGCGgaccacuccgggggGGGCCCGCCcccGGCGCg -3'
miRNA:   3'- -GCGGC-----UCGCag------------UCCGGGCGG---CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 126406 0.67 0.54818
Target:  5'- uCGCCGcuCGUCccccgAGGCCC-CCGGC-CCu -3'
miRNA:   3'- -GCGGCucGCAG-----UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 63715 0.67 0.54818
Target:  5'- gGCCGGGUGguugauggugCGGGCCacauagGCgCGGCGCg -3'
miRNA:   3'- gCGGCUCGCa---------GUCCGGg-----CG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 69513 0.67 0.54818
Target:  5'- gCGCCgGAGCGgggCGuGGCCCGCgaGcucGCGCg -3'
miRNA:   3'- -GCGG-CUCGCa--GU-CCGGGCGg-C---UGCGg -5'
5145 5' -63.7 NC_001798.1 + 121248 0.67 0.54818
Target:  5'- uGCCuGGCGgcggCGGGgguCCCGCUGucCGCCc -3'
miRNA:   3'- gCGGcUCGCa---GUCC---GGGCGGCu-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.