miRNA display CGI


Results 41 - 60 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 55769 0.66 0.586019
Target:  5'- gGCCGGcGCGcugCAG--CCGCCGACcGCCu -3'
miRNA:   3'- gCGGCU-CGCa--GUCcgGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 80217 0.66 0.586019
Target:  5'- uGCCGA-CGUUuuuggacggAGGCCCcCCGAC-CCg -3'
miRNA:   3'- gCGGCUcGCAG---------UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 88052 0.66 0.586019
Target:  5'- cCGCUGGGgGggCGGGCUCGUccccuggggcggCGGCGUCu -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGGGCG------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2877 0.66 0.586019
Target:  5'- cCGCCGGccacGCG-CAGGucCCCGCgcaGGCGCa -3'
miRNA:   3'- -GCGGCU----CGCaGUCC--GGGCGg--CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 30767 0.66 0.586019
Target:  5'- gGCCGAGgCGgccgugCGGGCCgGCaCGGcCGUg -3'
miRNA:   3'- gCGGCUC-GCa-----GUCCGGgCG-GCU-GCGg -5'
5145 5' -63.7 NC_001798.1 + 81137 0.66 0.586019
Target:  5'- uCGCgCGGGCcauccUCGggcGGCCCuUCGACGCCu -3'
miRNA:   3'- -GCG-GCUCGc----AGU---CCGGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 135505 0.66 0.586019
Target:  5'- aCGCCGcgcacGGCGcgaucCAGgacGCCCGCCGG-GCCc -3'
miRNA:   3'- -GCGGC-----UCGCa----GUC---CGGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 95524 0.66 0.586019
Target:  5'- gCGCCcugGAGCG-CGGGCauggcgaguggUCGaCCGACGCg -3'
miRNA:   3'- -GCGG---CUCGCaGUCCG-----------GGC-GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 56760 0.66 0.585066
Target:  5'- aGCUGGcaggugaaggugcGCGggGGGCCCuggccGCCGACgGCCg -3'
miRNA:   3'- gCGGCU-------------CGCagUCCGGG-----CGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 131903 0.66 0.585066
Target:  5'- uCGCCGAcgaugcaGCaGcUGGGCCgCGUCGACGCg -3'
miRNA:   3'- -GCGGCU-------CG-CaGUCCGG-GCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 98838 0.66 0.585066
Target:  5'- aCGCCGAuGCc-CAGuuuuacguguGCCCGCCcccgacgGGCGCCa -3'
miRNA:   3'- -GCGGCU-CGcaGUC----------CGGGCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 37393 0.66 0.58316
Target:  5'- cCGaCCGAGCcaccgggcggguccGUgGGGCCgGCCGACcaaccCCg -3'
miRNA:   3'- -GC-GGCUCG--------------CAgUCCGGgCGGCUGc----GG- -5'
5145 5' -63.7 NC_001798.1 + 80559 0.66 0.576502
Target:  5'- gGCgCGAgGCGUCccuccccgAGGCCC-CCcACGCCc -3'
miRNA:   3'- gCG-GCU-CGCAG--------UCCGGGcGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 31595 0.66 0.576502
Target:  5'- gGCCGucgccccgcGCGUcCGGaGUCCGCCccGCGCCg -3'
miRNA:   3'- gCGGCu--------CGCA-GUC-CGGGCGGc-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 77640 0.66 0.576502
Target:  5'- gCGCCGA-CGaacuUgAGG-CCGCCGuCGCCg -3'
miRNA:   3'- -GCGGCUcGC----AgUCCgGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25350 0.66 0.573653
Target:  5'- gGCCGAGC-UCAcGGaccaCCCGCUcuuccccgcgccguGGCGCCc -3'
miRNA:   3'- gCGGCUCGcAGU-CC----GGGCGG--------------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 79565 0.67 0.567019
Target:  5'- gGCCGucAGCGcUCuGGaUCUGCCGuuCGCCa -3'
miRNA:   3'- gCGGC--UCGC-AGuCC-GGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 76379 0.67 0.567019
Target:  5'- gGCCuGGCucUCGGuCCUGaCCGACGCCg -3'
miRNA:   3'- gCGGcUCGc-AGUCcGGGC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 27615 0.67 0.567019
Target:  5'- gCGCgGGGCugcccugccgCccGCCCGCCGcCGCCg -3'
miRNA:   3'- -GCGgCUCGca--------GucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 38261 0.67 0.567019
Target:  5'- uGCaGGGCGUUuucGGCCUGCCacGugGCa -3'
miRNA:   3'- gCGgCUCGCAGu--CCGGGCGG--CugCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.