miRNA display CGI


Results 21 - 40 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 153220 0.66 0.60897
Target:  5'- cCGcCCGA-CGgccCGGGCCCGCgGcggcggaggacccgcGCGCCg -3'
miRNA:   3'- -GC-GGCUcGCa--GUCCGGGCGgC---------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 124021 0.66 0.605136
Target:  5'- -cCCGGGCaGcCGGGCCCGCCauuuaggauGGCuGCUa -3'
miRNA:   3'- gcGGCUCG-CaGUCCGGGCGG---------CUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 116706 0.66 0.605136
Target:  5'- gCGUCGu-CGUCgacGGGCCCGCC-AUGCUc -3'
miRNA:   3'- -GCGGCucGCAG---UCCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 41178 0.66 0.605136
Target:  5'- gGCCG-GCGUaguucaaaagaUAGG-UCGCCGGgGCCa -3'
miRNA:   3'- gCGGCuCGCA-----------GUCCgGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 1507 0.66 0.605136
Target:  5'- -nCCGAgGCGgc-GGCCCgGCCGuccaGCGCCg -3'
miRNA:   3'- gcGGCU-CGCaguCCGGG-CGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108563 0.66 0.602263
Target:  5'- gCGCUGuuGCGguccCGGGCCUggguaacauucgcgGCCG-CGCCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCGGG--------------CGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 85298 0.66 0.595566
Target:  5'- gGCCGGG-GUCcgcccgcGGCCCGCCcgcaGACcCCa -3'
miRNA:   3'- gCGGCUCgCAGu------CCGGGCGG----CUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 80284 0.66 0.595566
Target:  5'- gCGCCGGGgcaagcUGUCcgaaaccGaCCCGCUGGCGCCc -3'
miRNA:   3'- -GCGGCUC------GCAGuc-----C-GGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 72721 0.66 0.595566
Target:  5'- gGCCaucGUGUCGGGCauccaCGCCagGGCGUCa -3'
miRNA:   3'- gCGGcu-CGCAGUCCGg----GCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102999 0.66 0.595566
Target:  5'- aCGCCGGGgGccCAGGUgCGCCcg-GCCa -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGgGCGGcugCGG- -5'
5145 5' -63.7 NC_001798.1 + 100412 0.66 0.595566
Target:  5'- aGCCGuGCaccgUGGGCCa-CCGGCGCUa -3'
miRNA:   3'- gCGGCuCGca--GUCCGGgcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108836 0.66 0.595566
Target:  5'- gGCCcguGGGCGUCuggacgacgggcGGGCUgGCguucgggugCGACGCCg -3'
miRNA:   3'- gCGG---CUCGCAG------------UCCGGgCG---------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 150465 0.66 0.595566
Target:  5'- gGCCGcGCGg-GGGCgCGCgGcGCGCCc -3'
miRNA:   3'- gCGGCuCGCagUCCGgGCGgC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 73217 0.66 0.595566
Target:  5'- gCGCCucGGCGUUucGGCcuuCCGCCGGC-CCg -3'
miRNA:   3'- -GCGGc-UCGCAGu-CCG---GGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 153314 0.66 0.595566
Target:  5'- gGCuCGGGC-UCGGGCCCGagcuCGG-GCCu -3'
miRNA:   3'- gCG-GCUCGcAGUCCGGGCg---GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 1338 0.66 0.595566
Target:  5'- cCGCCGcggcccGCG-CAGcUCCGCCGGgcCGCCg -3'
miRNA:   3'- -GCGGCu-----CGCaGUCcGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 90675 0.66 0.595566
Target:  5'- aCGCCcccGGCGacucgcgCAGGgCCGCCGccagGCGCUc -3'
miRNA:   3'- -GCGGc--UCGCa------GUCCgGGCGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 132145 0.66 0.59461
Target:  5'- cCGCCGGGgGccggCGGGCggggCGCCccccccgGACGCCc -3'
miRNA:   3'- -GCGGCUCgCa---GUCCGg---GCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 135505 0.66 0.586019
Target:  5'- aCGCCGcgcacGGCGcgaucCAGgacGCCCGCCGG-GCCc -3'
miRNA:   3'- -GCGGC-----UCGCa----GUC---CGGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 81137 0.66 0.586019
Target:  5'- uCGCgCGGGCcauccUCGggcGGCCCuUCGACGCCu -3'
miRNA:   3'- -GCG-GCUCGc----AGU---CCGGGcGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.