miRNA display CGI


Results 21 - 40 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 49050 0.76 0.16815
Target:  5'- gGCUGA--GUCAGGCCCaGCUGAUGCCc -3'
miRNA:   3'- gCGGCUcgCAGUCCGGG-CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 92931 0.76 0.16815
Target:  5'- aGgCGGuCGUCGGGCCCgccGCCGugGCCc -3'
miRNA:   3'- gCgGCUcGCAGUCCGGG---CGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 78580 0.75 0.172191
Target:  5'- gCGCgCGAGCGcCGGGCCCaGaUCGAgGCCg -3'
miRNA:   3'- -GCG-GCUCGCaGUCCGGG-C-GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 4183 0.75 0.172191
Target:  5'- gCGCCGAGgGUCccGCCCGCggcguggucugCGGCGCUg -3'
miRNA:   3'- -GCGGCUCgCAGucCGGGCG-----------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 54798 0.75 0.173832
Target:  5'- aCGCCGccaugcccgcgGGCGUCGGGCuuggcgccacccccgCCGCCGACaCCa -3'
miRNA:   3'- -GCGGC-----------UCGCAGUCCG---------------GGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 4034 0.75 0.176319
Target:  5'- gGCCGGccaccgccGCG-CGGGCCCGgCGGCGCUc -3'
miRNA:   3'- gCGGCU--------CGCaGUCCGGGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24490 0.75 0.176319
Target:  5'- gCGCCuGAGCGcCGcGCCCGCCuccGCGCCg -3'
miRNA:   3'- -GCGG-CUCGCaGUcCGGGCGGc--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 93746 0.75 0.176737
Target:  5'- aCGCUGAuGCGgcugCGGGCCCGCCaccccaaguucgcgaGCGCCg -3'
miRNA:   3'- -GCGGCU-CGCa---GUCCGGGCGGc--------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1976 0.75 0.177995
Target:  5'- gCGCCGAGaCGUCGGgggcgcgguccaguuGCCCGCCcaGGCgGCCg -3'
miRNA:   3'- -GCGGCUC-GCAGUC---------------CGGGCGG--CUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 128587 0.75 0.180535
Target:  5'- gGCCGcGCGgacgCGGGCgucaacgacgaCGCCGACGCCg -3'
miRNA:   3'- gCGGCuCGCa---GUCCGg----------GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 23714 0.75 0.189235
Target:  5'- gGCCGGGCGgccccggCGGGUCgagcuggaCGCCGACGCg -3'
miRNA:   3'- gCGGCUCGCa------GUCCGG--------GCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 109713 0.75 0.193722
Target:  5'- gGCCGAGCaG-CGGgaacgcGCCCGCCGGgGCCu -3'
miRNA:   3'- gCGGCUCG-CaGUC------CGGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 34852 0.75 0.193722
Target:  5'- cCGCCGGGCGg-GGGacgccuUCCGcCCGGCGCCg -3'
miRNA:   3'- -GCGGCUCGCagUCC------GGGC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 109575 0.75 0.198302
Target:  5'- -cCCGAGCG-C-GGCCCGCCugaucGACGCCc -3'
miRNA:   3'- gcGGCUCGCaGuCCGGGCGG-----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102643 0.74 0.202976
Target:  5'- uCGCCGGGCGgcggagGGGCCggggCGcCCGAUGCCg -3'
miRNA:   3'- -GCGGCUCGCag----UCCGG----GC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 92402 0.74 0.207745
Target:  5'- gGCCGcGGuCGUCGGGuCCCGCaCGACggGCCu -3'
miRNA:   3'- gCGGC-UC-GCAGUCC-GGGCG-GCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 150373 0.74 0.207745
Target:  5'- aCGgCGGGCGgcgCGGGCCCGgCCG-CGUCc -3'
miRNA:   3'- -GCgGCUCGCa--GUCCGGGC-GGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 23651 0.74 0.212611
Target:  5'- cCGCCugGAGCGccgcCGGGCCCGCgCGGCggugGCCg -3'
miRNA:   3'- -GCGG--CUCGCa---GUCCGGGCG-GCUG----CGG- -5'
5145 5' -63.7 NC_001798.1 + 74775 0.74 0.212611
Target:  5'- aCGCCGcGGCcUCGGGUCCaCCGcACGCCg -3'
miRNA:   3'- -GCGGC-UCGcAGUCCGGGcGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25637 0.74 0.217574
Target:  5'- cCGCCGAGCG-CGGcgggcuguccuGCCUGCUGGCgGCCc -3'
miRNA:   3'- -GCGGCUCGCaGUC-----------CGGGCGGCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.