miRNA display CGI


Results 21 - 40 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 3962 0.72 0.297866
Target:  5'- gCGCCGGaggccGCGUCGGcGUccagcucgaCCGCCGGgGCCg -3'
miRNA:   3'- -GCGGCU-----CGCAGUC-CG---------GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 4034 0.75 0.176319
Target:  5'- gGCCGGccaccgccGCG-CGGGCCCGgCGGCGCUc -3'
miRNA:   3'- gCGGCU--------CGCaGUCCGGGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 4098 0.7 0.39454
Target:  5'- gGCCgGGGCGggcucggcccugggCGGGCUCgGCCGggGCGCCg -3'
miRNA:   3'- gCGG-CUCGCa-------------GUCCGGG-CGGC--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 4183 0.75 0.172191
Target:  5'- gCGCCGAGgGUCccGCCCGCggcguggucugCGGCGCUg -3'
miRNA:   3'- -GCGGCUCgCAGucCGGGCG-----------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 4353 0.76 0.164194
Target:  5'- gGCCGAGCGcCggcgggGGGCgCGCCGGCGgCg -3'
miRNA:   3'- gCGGCUCGCaG------UCCGgGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 4711 0.78 0.111402
Target:  5'- aCGCCGuccGCGgCAGGCUCGUCGACgGCCu -3'
miRNA:   3'- -GCGGCu--CGCaGUCCGGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 4912 0.68 0.46639
Target:  5'- cCGCCGGuCGUCuccgccgcGGCCCGgaGACGUCc -3'
miRNA:   3'- -GCGGCUcGCAGu-------CCGGGCggCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 5301 0.67 0.538833
Target:  5'- aCGCCGccGCGcCccGGCUCGCCGGgguucCGCCc -3'
miRNA:   3'- -GCGGCu-CGCaGu-CCGGGCGGCU-----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 5385 0.67 0.557577
Target:  5'- gCGuCCGuGGCGgc-GGCCCGuuGgucGCGCCg -3'
miRNA:   3'- -GC-GGC-UCGCaguCCGGGCggC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 9148 0.67 0.511141
Target:  5'- aCG-CGGGCG-C-GGCgCCGCCcGCGCCg -3'
miRNA:   3'- -GCgGCUCGCaGuCCG-GGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 11180 0.68 0.475183
Target:  5'- ---gGGGCGguggggCGGGCCUGCCGAacgGCCc -3'
miRNA:   3'- gcggCUCGCa-----GUCCGGGCGGCUg--CGG- -5'
5145 5' -63.7 NC_001798.1 + 16632 0.67 0.538833
Target:  5'- gCGCCGGG-G-CAGGUcuugCCGCCcGGCGUCc -3'
miRNA:   3'- -GCGGCUCgCaGUCCG----GGCGG-CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 18842 0.69 0.423753
Target:  5'- uCGCCcGGCGaaccuucgCAGGCUgGCCGA-GCCu -3'
miRNA:   3'- -GCGGcUCGCa-------GUCCGGgCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 19967 0.69 0.440532
Target:  5'- aGCCGAGCcgcgaUAGcCCCGCCGgACGCg -3'
miRNA:   3'- gCGGCUCGca---GUCcGGGCGGC-UGCGg -5'
5145 5' -63.7 NC_001798.1 + 20770 0.68 0.46639
Target:  5'- cCGCgggGAGCGaCGGcGCCCGCCG-CGUa -3'
miRNA:   3'- -GCGg--CUCGCaGUC-CGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 21658 0.71 0.324676
Target:  5'- cCGCCG-GCGUCucuGuCUCGCUGugGCCc -3'
miRNA:   3'- -GCGGCuCGCAGu--CcGGGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 21957 0.68 0.457682
Target:  5'- gGCgGAGCGcgggaugacgCGGGCCCcggGCagGGCGCCa -3'
miRNA:   3'- gCGgCUCGCa---------GUCCGGG---CGg-CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 22343 0.7 0.399318
Target:  5'- aCGCgCGGGCGUCGGGgCgggGCCG-CGCa -3'
miRNA:   3'- -GCG-GCUCGCAGUCCgGg--CGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 23342 0.71 0.324676
Target:  5'- cCGCCGGcGCGcCc--CCCGCCGGCGCUc -3'
miRNA:   3'- -GCGGCU-CGCaGuccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 23651 0.74 0.212611
Target:  5'- cCGCCugGAGCGccgcCGGGCCCGCgCGGCggugGCCg -3'
miRNA:   3'- -GCGG--CUCGCa---GUCCGGGCG-GCUG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.