miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 1196 0.7 0.391375
Target:  5'- cCGCCGcGGCcagCAccguccccgcgcGGCCCgcgGCCGACGCCc -3'
miRNA:   3'- -GCGGC-UCGca-GU------------CCGGG---CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1338 0.66 0.595566
Target:  5'- cCGCCGcggcccGCG-CAGcUCCGCCGGgcCGCCg -3'
miRNA:   3'- -GCGGCu-----CGCaGUCcGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 1480 0.76 0.156531
Target:  5'- gCGCCGGGCGcCAuGGCgUCGCCcGCGCCc -3'
miRNA:   3'- -GCGGCUCGCaGU-CCG-GGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1507 0.66 0.605136
Target:  5'- -nCCGAgGCGgc-GGCCCgGCCGuccaGCGCCg -3'
miRNA:   3'- gcGGCU-CGCaguCCGGG-CGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1797 0.69 0.410609
Target:  5'- gGCCagguaGGCGUgcugccgcgagaccaCGGGCCCGUCGGCggGCCa -3'
miRNA:   3'- gCGGc----UCGCA---------------GUCCGGGCGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 1976 0.75 0.177995
Target:  5'- gCGCCGAGaCGUCGGgggcgcgguccaguuGCCCGCCcaGGCgGCCg -3'
miRNA:   3'- -GCGGCUC-GCAGUC---------------CGGGCGG--CUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 2073 0.67 0.549118
Target:  5'- cCGCCGcgcucGGCGgaccacuccgggggGGGCCCGCCcccGGCGCg -3'
miRNA:   3'- -GCGGC-----UCGCag------------UCCGGGCGG---CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 2206 0.72 0.297866
Target:  5'- cCGCCGcGCGgcgcagCGGGCCCGa-GGCGCg -3'
miRNA:   3'- -GCGGCuCGCa-----GUCCGGGCggCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 2242 0.68 0.48763
Target:  5'- gGCCGAagGCGgCGGGCgCGCCGccggggggcggggcgGCGCa -3'
miRNA:   3'- gCGGCU--CGCaGUCCGgGCGGC---------------UGCGg -5'
5145 5' -63.7 NC_001798.1 + 2419 0.71 0.345211
Target:  5'- gCGCCG-GCGUguGGCugggccccggcggCUGgCGGCGCCa -3'
miRNA:   3'- -GCGGCuCGCAguCCG-------------GGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2612 0.7 0.35324
Target:  5'- gCGCgGGGCG-Cc-GCCCGgCGGCGCCc -3'
miRNA:   3'- -GCGgCUCGCaGucCGGGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2812 0.7 0.35324
Target:  5'- gCGCCGGGCc-CAGGgCC-CCGGCGaCCa -3'
miRNA:   3'- -GCGGCUCGcaGUCCgGGcGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 2877 0.66 0.586019
Target:  5'- cCGCCGGccacGCG-CAGGucCCCGCgcaGGCGCa -3'
miRNA:   3'- -GCGGCU----CGCaGUCC--GGGCGg--CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 2982 0.7 0.391375
Target:  5'- gGCgGGGCGgccGGCCCGCgGGCcCCg -3'
miRNA:   3'- gCGgCUCGCaguCCGGGCGgCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 3170 0.69 0.407362
Target:  5'- gCGCCGucGuCGUCGucgucgucgucGGCCCcgGCCGGCGCg -3'
miRNA:   3'- -GCGGCu-C-GCAGU-----------CCGGG--CGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 3260 0.72 0.293996
Target:  5'- gCGCCGuAGCcggCGGGCaCCGCgcgcucgucggccggCGACGCCg -3'
miRNA:   3'- -GCGGC-UCGca-GUCCG-GGCG---------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3306 0.67 0.556635
Target:  5'- cCGCCGAcggcaacggggcgGCGgcggcggCGGGCuucCCGCgGGCGUCg -3'
miRNA:   3'- -GCGGCU-------------CGCa------GUCCG---GGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3514 0.72 0.272201
Target:  5'- gGCCGccacguGCGcCAGGCCCcaGCCGAagcggccCGCCg -3'
miRNA:   3'- gCGGCu-----CGCaGUCCGGG--CGGCU-------GCGG- -5'
5145 5' -63.7 NC_001798.1 + 3786 0.67 0.557577
Target:  5'- gCGCCgGGGCGcCcgAGGCCUcgaaccggGCCcGCGCCu -3'
miRNA:   3'- -GCGG-CUCGCaG--UCCGGG--------CGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3849 0.68 0.484058
Target:  5'- gGCCGGGgcggcUGUCGcccaGCCCGCCGuacagcacGCGCCc -3'
miRNA:   3'- gCGGCUC-----GCAGUc---CGGGCGGC--------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.