miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 154088 0.73 0.238426
Target:  5'- gGCUgGAGCGcCgGGGCgCgGCCGGCGCCg -3'
miRNA:   3'- gCGG-CUCGCaG-UCCG-GgCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 153828 0.69 0.407362
Target:  5'- gGCgCG-GCGUgCGGGgCCuCCGGCGCCu -3'
miRNA:   3'- gCG-GCuCGCA-GUCCgGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 153701 0.69 0.423753
Target:  5'- cCGCCG-GCG-CAGGCUCaGgCG-CGCCa -3'
miRNA:   3'- -GCGGCuCGCaGUCCGGG-CgGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 153389 0.7 0.383536
Target:  5'- gCGCCGGaaccggucGCgGUC-GGCCCGCuCGcGCGCCc -3'
miRNA:   3'- -GCGGCU--------CG-CAGuCCGGGCG-GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 153314 0.66 0.595566
Target:  5'- gGCuCGGGC-UCGGGCCCGagcuCGG-GCCu -3'
miRNA:   3'- gCG-GCUCGcAGUCCGGGCg---GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 153220 0.66 0.60897
Target:  5'- cCGcCCGA-CGgccCGGGCCCGCgGcggcggaggacccgcGCGCCg -3'
miRNA:   3'- -GC-GGCUcGCa--GUCCGGGCGgC---------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 153015 0.77 0.135451
Target:  5'- uCGCCgGGGCGgagucCGGGCCCGCgCGGCGgCg -3'
miRNA:   3'- -GCGG-CUCGCa----GUCCGGGCG-GCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 152618 0.67 0.554753
Target:  5'- cCGCCGAcGCaGaUGGGaguccccccggcgcCCCGCCGGCGCg -3'
miRNA:   3'- -GCGGCU-CG-CaGUCC--------------GGGCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 152220 0.68 0.457682
Target:  5'- uGCCGGGgGUCugccgcGGCggCCGCuCGGgGCCg -3'
miRNA:   3'- gCGGCUCgCAGu-----CCG--GGCG-GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 152095 0.68 0.475183
Target:  5'- gGCCGGGgGUCGGcCCCGUCaaGCGUCc -3'
miRNA:   3'- gCGGCUCgCAGUCcGGGCGGc-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 151841 0.69 0.423753
Target:  5'- gCGCgGGGCGUgaggCGGGaCCC-CCG-CGCCg -3'
miRNA:   3'- -GCGgCUCGCA----GUCC-GGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 151611 0.71 0.331653
Target:  5'- gGCCGGGgGcCGGGCCgggGgCGugGCCg -3'
miRNA:   3'- gCGGCUCgCaGUCCGGg--CgGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 151582 0.67 0.538833
Target:  5'- uCGgCGGGCGUgGGG-CUGCCcuGGCGCUc -3'
miRNA:   3'- -GCgGCUCGCAgUCCgGGCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 151266 0.68 0.475183
Target:  5'- gGCCGuGCc---GGCCCGCaCGGcCGCCu -3'
miRNA:   3'- gCGGCuCGcaguCCGGGCG-GCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 150674 0.7 0.399318
Target:  5'- cCGCCGcGGCGUCuucGCCCacCCGcGCGCCu -3'
miRNA:   3'- -GCGGC-UCGCAGuc-CGGGc-GGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 150465 0.66 0.595566
Target:  5'- gGCCGcGCGg-GGGCgCGCgGcGCGCCc -3'
miRNA:   3'- gCGGCuCGCagUCCGgGCGgC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 150373 0.74 0.207745
Target:  5'- aCGgCGGGCGgcgCGGGCCCGgCCG-CGUCc -3'
miRNA:   3'- -GCgGCUCGCa--GUCCGGGC-GGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 150028 0.73 0.233061
Target:  5'- uCGcCCGAGUccgaGUCcgGGGCCCgGCgCGGCGCCg -3'
miRNA:   3'- -GC-GGCUCG----CAG--UCCGGG-CG-GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 149972 0.81 0.076731
Target:  5'- aCGCCGAcggggGCG-CGGcGCCCGCgGACGCCg -3'
miRNA:   3'- -GCGGCU-----CGCaGUC-CGGGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 149664 0.73 0.255141
Target:  5'- gCGCCGGGuCG-CGGGCCCcggGCuCGGgGCCg -3'
miRNA:   3'- -GCGGCUC-GCaGUCCGGG---CG-GCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.