miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 125541 1.1 0.000574
Target:  5'- cCGCCGAGCGUCAGGCCCGCCGACGCCu -3'
miRNA:   3'- -GCGGCUCGCAGUCCGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 30449 0.85 0.039683
Target:  5'- gGCCGAGCGcCAGggcagccccacGCCCGCCGACGCg -3'
miRNA:   3'- gCGGCUCGCaGUC-----------CGGGCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 149972 0.81 0.076731
Target:  5'- aCGCCGAcggggGCG-CGGcGCCCGCgGACGCCg -3'
miRNA:   3'- -GCGGCU-----CGCaGUC-CGGGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 43079 0.8 0.082718
Target:  5'- gCGCCGGGC-UCGGGCgCCGCCGcCGCg -3'
miRNA:   3'- -GCGGCUCGcAGUCCG-GGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 25483 0.8 0.089148
Target:  5'- cCGCUGcGCGccUCGGGCCCGCUG-CGCCg -3'
miRNA:   3'- -GCGGCuCGC--AGUCCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 121550 0.79 0.103459
Target:  5'- gCGCCuGGCGUgGGGCCCGUgGGCGaCCu -3'
miRNA:   3'- -GCGGcUCGCAgUCCGGGCGgCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 4711 0.78 0.111402
Target:  5'- aCGCCGuccGCGgCAGGCUCGUCGACgGCCu -3'
miRNA:   3'- -GCGGCu--CGCaGUCCGGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 84108 0.78 0.122881
Target:  5'- gGCCGGGCGUcCAGGCCgaggCGCCccuuGACGUCg -3'
miRNA:   3'- gCGGCUCGCA-GUCCGG----GCGG----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 58301 0.78 0.127153
Target:  5'- gGCgCGAGggucugacacagcucCGUCAGGCCCGCCGcCGCg -3'
miRNA:   3'- gCG-GCUC---------------GCAGUCCGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 153015 0.77 0.135451
Target:  5'- uCGCCgGGGCGgagucCGGGCCCGCgCGGCGgCg -3'
miRNA:   3'- -GCGG-CUCGCa----GUCCGGGCG-GCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 134352 0.77 0.135451
Target:  5'- gGUCGAaaggGCGUCgugGGGCCCGCCGgccgcuccucGCGCCg -3'
miRNA:   3'- gCGGCU----CGCAG---UCCGGGCGGC----------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 147154 0.77 0.14217
Target:  5'- gGCCGGGgGUCccGGGUagCCGcCCGGCGCCg -3'
miRNA:   3'- gCGGCUCgCAG--UCCG--GGC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 34114 0.76 0.149194
Target:  5'- gCGgUGGGCGUaCGGGCCCGaCCcGCGCCu -3'
miRNA:   3'- -GCgGCUCGCA-GUCCGGGC-GGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1480 0.76 0.156531
Target:  5'- gCGCCGGGCGcCAuGGCgUCGCCcGCGCCc -3'
miRNA:   3'- -GCGGCUCGCaGU-CCG-GGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25862 0.76 0.156531
Target:  5'- aCGCCGuGCG-CGccgcggacuGGCCCGCCGACggGCCc -3'
miRNA:   3'- -GCGGCuCGCaGU---------CCGGGCGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 81728 0.76 0.160321
Target:  5'- uGCCGcGCGUgcgCAGGuCCCGCCGgACGCg -3'
miRNA:   3'- gCGGCuCGCA---GUCC-GGGCGGC-UGCGg -5'
5145 5' -63.7 NC_001798.1 + 72154 0.76 0.164194
Target:  5'- gGCCG-GCGUCGGGCCCa-CGAUGCa -3'
miRNA:   3'- gCGGCuCGCAGUCCGGGcgGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 4353 0.76 0.164194
Target:  5'- gGCCGAGCGcCggcgggGGGCgCGCCGGCGgCg -3'
miRNA:   3'- gCGGCUCGCaG------UCCGgGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 144529 0.76 0.164194
Target:  5'- gCGCCGAccucGCGUCGGGgagaCCCGCCGugGg- -3'
miRNA:   3'- -GCGGCU----CGCAGUCC----GGGCGGCugCgg -5'
5145 5' -63.7 NC_001798.1 + 24430 0.76 0.164194
Target:  5'- gGCCGAcgaGCGcgCGGuGCCCGCCGgcuacgGCGCCg -3'
miRNA:   3'- gCGGCU---CGCa-GUC-CGGGCGGC------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.