miRNA display CGI


Results 41 - 60 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 23714 0.75 0.189235
Target:  5'- gGCCGGGCGgccccggCGGGUCgagcuggaCGCCGACGCg -3'
miRNA:   3'- gCGGCUCGCa------GUCCGG--------GCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 23886 0.67 0.511141
Target:  5'- gCGcCCGAgGCGgaggaggcgCGGGCCCGguUCGAgGCCu -3'
miRNA:   3'- -GC-GGCU-CGCa--------GUCCGGGC--GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 24191 0.71 0.317809
Target:  5'- gGCCuGGCG-CAcguGGCggCCGCCGugGCCa -3'
miRNA:   3'- gCGGcUCGCaGU---CCG--GGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 24372 0.69 0.423753
Target:  5'- aCGCCc-GCGggaaGCCCGCCGcCGCCg -3'
miRNA:   3'- -GCGGcuCGCagucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24430 0.76 0.164194
Target:  5'- gGCCGAcgaGCGcgCGGuGCCCGCCGgcuacgGCGCCg -3'
miRNA:   3'- gCGGCU---CGCa-GUC-CGGGCGGC------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24490 0.75 0.176319
Target:  5'- gCGCCuGAGCGcCGcGCCCGCCuccGCGCCg -3'
miRNA:   3'- -GCGG-CUCGCaGUcCGGGCGGc--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24552 0.66 0.624324
Target:  5'- gCGCCG-GCGgugguGGCggCgGCCGGCGCg -3'
miRNA:   3'- -GCGGCuCGCagu--CCG--GgCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 24685 0.73 0.260922
Target:  5'- gGCCgGAGCcc--GGCCCGCCG-CGCCc -3'
miRNA:   3'- gCGG-CUCGcaguCCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24720 0.7 0.391375
Target:  5'- gGCCcgcGGGCG-CGGccgcCCCGCCGcACGCCg -3'
miRNA:   3'- gCGG---CUCGCaGUCc---GGGCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24841 0.73 0.238426
Target:  5'- gGCCG-GCGgcagCgAGG-CCGCCGugGCCg -3'
miRNA:   3'- gCGGCuCGCa---G-UCCgGGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 24891 0.67 0.52031
Target:  5'- uCGCCgGGGCccUGGGCCCGgCGcUGCCg -3'
miRNA:   3'- -GCGG-CUCGcaGUCCGGGCgGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25093 0.68 0.484058
Target:  5'- cCGCCGGGCGgcgccccgCgccccccgaagaAGaGCCgCGCgGACGCCc -3'
miRNA:   3'- -GCGGCUCGCa-------G------------UC-CGG-GCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25143 0.71 0.345936
Target:  5'- cCGCCccGCGgccgccccucccgCGGGggccgcgccccccgcCCCGCCGACGCCg -3'
miRNA:   3'- -GCGGcuCGCa------------GUCC---------------GGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25238 0.73 0.249465
Target:  5'- cCGCCGAGgGccccgacccgCAGGgCgGCUGGCGCCg -3'
miRNA:   3'- -GCGGCUCgCa---------GUCCgGgCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25272 0.67 0.52031
Target:  5'- nCGCC-AGcCGcCgGGGCCCagccacacGCCGGCGCCc -3'
miRNA:   3'- -GCGGcUC-GCaG-UCCGGG--------CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25350 0.66 0.573653
Target:  5'- gGCCGAGC-UCAcGGaccaCCCGCUcuuccccgcgccguGGCGCCc -3'
miRNA:   3'- gCGGCUCGcAGU-CC----GGGCGG--------------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25483 0.8 0.089148
Target:  5'- cCGCUGcGCGccUCGGGCCCGCUG-CGCCg -3'
miRNA:   3'- -GCGGCuCGC--AGUCCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25580 0.72 0.303088
Target:  5'- uGCCGGGCGaggaccuggccgCGGGCCgCGCCGGgGgCg -3'
miRNA:   3'- gCGGCUCGCa-----------GUCCGG-GCGGCUgCgG- -5'
5145 5' -63.7 NC_001798.1 + 25637 0.74 0.217574
Target:  5'- cCGCCGAGCG-CGGcgggcuguccuGCCUGCUGGCgGCCc -3'
miRNA:   3'- -GCGGCUCGCaGUC-----------CGGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 25706 0.67 0.52031
Target:  5'- cCGCCuGGGCGggcaacuggacCGGcGCCC-CCGACGUCu -3'
miRNA:   3'- -GCGG-CUCGCa----------GUC-CGGGcGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.