miRNA display CGI


Results 41 - 60 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 47075 0.66 0.814058
Target:  5'- cGGGGCGAcagcGCCGGugUGGUguccguCCCGgGGGu -3'
miRNA:   3'- -CCCUGCU----CGGUUugGUCG------GGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 131347 0.66 0.81321
Target:  5'- cGGGcGCGAcgucggcGCCcGGCgCGGCCUCGgGGGa -3'
miRNA:   3'- -CCC-UGCU-------CGGuUUG-GUCGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 122191 0.66 0.80895
Target:  5'- gGGGACc-GCCAAGCCGcgaucGCUggucgaguggcuggaCCGCGGGu -3'
miRNA:   3'- -CCCUGcuCGGUUUGGU-----CGG---------------GGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 9716 0.66 0.805514
Target:  5'- -cGACGGGCuCGGGCUGGCgCUGgGGGa -3'
miRNA:   3'- ccCUGCUCG-GUUUGGUCGgGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 51101 0.66 0.805514
Target:  5'- gGGGagaugGCGAGCgaaGAGCCGcCCCCGCGc- -3'
miRNA:   3'- -CCC-----UGCUCGg--UUUGGUcGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 73166 0.66 0.805514
Target:  5'- uGGACuGGCUAuuaauaAACgAGCuCCUGCAGGu -3'
miRNA:   3'- cCCUGcUCGGU------UUGgUCG-GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 132498 0.66 0.805514
Target:  5'- uGGGGCGGGUaCGGACU--CUCCGCAaGGg -3'
miRNA:   3'- -CCCUGCUCG-GUUUGGucGGGGCGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 134639 0.66 0.805514
Target:  5'- aGGuguGCGAGgUcgGCCugcGGCCCCGCGGa -3'
miRNA:   3'- cCC---UGCUCgGuuUGG---UCGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 2026 0.66 0.805514
Target:  5'- cGGGcccGCaGAGCCGGuuGCCcagGGCCgCCaGCAGGc -3'
miRNA:   3'- -CCC---UG-CUCGGUU--UGG---UCGG-GG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 28199 0.66 0.805514
Target:  5'- cGGGGgGAaggcGCCGGA--GGCCCCGCAc- -3'
miRNA:   3'- -CCCUgCU----CGGUUUggUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 93162 0.66 0.805514
Target:  5'- cGGGCGAcGCCGccCUGGCCCUGgAGu -3'
miRNA:   3'- cCCUGCU-CGGUuuGGUCGGGGCgUCc -5'
5146 3' -58.7 NC_001798.1 + 135770 0.66 0.805514
Target:  5'- -cGGCG-GCCGGccGCCGGCCCgcCGgAGGa -3'
miRNA:   3'- ccCUGCuCGGUU--UGGUCGGG--GCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 62567 0.66 0.804652
Target:  5'- cGGACGucGCC--GCCAcgucauccacgacGCCCCGgAGGc -3'
miRNA:   3'- cCCUGCu-CGGuuUGGU-------------CGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 57467 0.66 0.802922
Target:  5'- gGGGGCgGGGCCGguuuggcgguggaGGCCuuacuuuucgucGCCuuGCGGGg -3'
miRNA:   3'- -CCCUG-CUCGGU-------------UUGGu-----------CGGggCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 23480 0.66 0.796822
Target:  5'- -cGACGAcGCCGcccgcgcccccGCCAGCgCCGCAGa -3'
miRNA:   3'- ccCUGCU-CGGUu----------UGGUCGgGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 93946 0.66 0.796822
Target:  5'- --cGCGucauGGCCGAGCUcgaGGCCCUGCAGu -3'
miRNA:   3'- cccUGC----UCGGUUUGG---UCGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 150858 0.66 0.796822
Target:  5'- cGGGucgcgGCGGGCUggGa-GGUUCCGCGGGu -3'
miRNA:   3'- -CCC-----UGCUCGGuuUggUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 34118 0.66 0.796822
Target:  5'- uGGGcguACGGGCCcGACCcgcgccuGCCCCccCGGGa -3'
miRNA:   3'- -CCC---UGCUCGGuUUGGu------CGGGGc-GUCC- -5'
5146 3' -58.7 NC_001798.1 + 90959 0.66 0.796822
Target:  5'- cGGugGGGUCGAACC--CCUCGgGGGc -3'
miRNA:   3'- cCCugCUCGGUUUGGucGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 74225 0.66 0.795945
Target:  5'- cGGGACGgcgacacGGCCuaucuguuuGACCcgcacGGCcugCCCGCGGGa -3'
miRNA:   3'- -CCCUGC-------UCGGu--------UUGG-----UCG---GGGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.