miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 139026 0.66 0.828219
Target:  5'- cGGGCGuuCCGguaccugcgAACCAGCCgcugcggcuggaggCCGCGGGc -3'
miRNA:   3'- cCCUGCucGGU---------UUGGUCGG--------------GGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 152479 0.66 0.825755
Target:  5'- aGGGGCGGcauuuacgauucccCCAAuaGCCGcgcGCCCCgGCGGGg -3'
miRNA:   3'- -CCCUGCUc-------------GGUU--UGGU---CGGGG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 31398 0.66 0.822445
Target:  5'- aGGACGccccccGCgAGA-CAGCCCCGCGcGGc -3'
miRNA:   3'- cCCUGCu-----CGgUUUgGUCGGGGCGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 16156 0.66 0.822445
Target:  5'- gGGGGCaccGAGCgccACgGGCggCCCGCGGGg -3'
miRNA:   3'- -CCCUG---CUCGguuUGgUCG--GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 18009 0.66 0.822445
Target:  5'- aGGAUG-GCC--GCUGGCUCCggGCAGGg -3'
miRNA:   3'- cCCUGCuCGGuuUGGUCGGGG--CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 32966 0.66 0.822445
Target:  5'- gGGGGgGGGaCGGACaCGGCCCCGaaCAGc -3'
miRNA:   3'- -CCCUgCUCgGUUUG-GUCGGGGC--GUCc -5'
5146 3' -58.7 NC_001798.1 + 33184 0.66 0.822445
Target:  5'- gGGGGCGGGCaCGAGaagccgcccCCAcCCCCG-AGGc -3'
miRNA:   3'- -CCCUGCUCG-GUUU---------GGUcGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 51752 0.66 0.822445
Target:  5'- -cGGCGGGCaaAAACCAGCCCCucccgcGCGauGGg -3'
miRNA:   3'- ccCUGCUCGg-UUUGGUCGGGG------CGU--CC- -5'
5146 3' -58.7 NC_001798.1 + 82068 0.66 0.822445
Target:  5'- cGGGGCcccgcGGCCGGcccaccccggcGCCucacgcGCCCCGCGGu -3'
miRNA:   3'- -CCCUGc----UCGGUU-----------UGGu-----CGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 104341 0.66 0.822445
Target:  5'- cGGGACG-GCUcccgGGAUCAGCaugcccagCUGCAGGc -3'
miRNA:   3'- -CCCUGCuCGG----UUUGGUCGg-------GGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 129337 0.66 0.822445
Target:  5'- aGGACG-GCCGcggagcGCCcgccgGGCCUgGCGGGg -3'
miRNA:   3'- cCCUGCuCGGUu-----UGG-----UCGGGgCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150377 0.66 0.822445
Target:  5'- cGGGcggcGCGGGCCcGGCCGcguccGCgCUCGCAGa -3'
miRNA:   3'- -CCC----UGCUCGGuUUGGU-----CG-GGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 89000 0.66 0.819946
Target:  5'- gGGGauccGCGAGCgGAucugcuuucgcaugGCCAGCCagucgcgcaGCAGGa -3'
miRNA:   3'- -CCC----UGCUCGgUU--------------UGGUCGGgg-------CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 108597 0.66 0.819946
Target:  5'- cGGcCGcGCCGGACC-GCgaggggcuuacguuCCCGCGGGg -3'
miRNA:   3'- cCCuGCuCGGUUUGGuCG--------------GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 25322 0.66 0.814058
Target:  5'- uGGA--GGCCu-ACUGcGCCCCGCGGGc -3'
miRNA:   3'- cCCUgcUCGGuuUGGU-CGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 26335 0.66 0.814058
Target:  5'- uGGGGCGcgacGCCGuGCgcggCGGCCCgGCGGa -3'
miRNA:   3'- -CCCUGCu---CGGUuUG----GUCGGGgCGUCc -5'
5146 3' -58.7 NC_001798.1 + 48966 0.66 0.814058
Target:  5'- cGGACGGGgUuucGCCAccGCCCCcCAGGc -3'
miRNA:   3'- cCCUGCUCgGuu-UGGU--CGGGGcGUCC- -5'
5146 3' -58.7 NC_001798.1 + 35437 0.66 0.814058
Target:  5'- cGGGAggcgUGGGCC--GCUGGCgCCGCGGc -3'
miRNA:   3'- -CCCU----GCUCGGuuUGGUCGgGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 93887 0.66 0.814058
Target:  5'- cGGACGGGuCCGAGaacacCCGGaCCaucaUGCAGGa -3'
miRNA:   3'- cCCUGCUC-GGUUU-----GGUC-GGg---GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 53366 0.66 0.814058
Target:  5'- -aGACGGGCUc-GCCAGCgaCCCGCAc- -3'
miRNA:   3'- ccCUGCUCGGuuUGGUCG--GGGCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.