miRNA display CGI


Results 21 - 40 of 277 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 4411 0.66 0.836324
Target:  5'- cGGGGCGccgggGGUCGcggcgacaggcuGGCCAugggguccggguacGCCCCGCGGa -3'
miRNA:   3'- -CCCUGC-----UCGGU------------UUGGU--------------CGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 5587 0.66 0.838721
Target:  5'- aGGGGCcGGCgAggUC-GCCCCGUuGGu -3'
miRNA:   3'- -CCCUGcUCGgUuuGGuCGGGGCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 6261 0.73 0.408658
Target:  5'- gGGGACGGGCCGggggGACgGGCCggggggacgggCCGgGGGg -3'
miRNA:   3'- -CCCUGCUCGGU----UUGgUCGG-----------GGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 6313 0.71 0.564958
Target:  5'- gGGGACGGGCCGGGgggaCGGgCCgGgGGGa -3'
miRNA:   3'- -CCCUGCUCGGUUUg---GUCgGGgCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 6352 0.74 0.360207
Target:  5'- gGGGACGGGCCGggggGACgGGCCggggggCCGgGGGg -3'
miRNA:   3'- -CCCUGCUCGGU----UUGgUCGG------GGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 6538 0.69 0.674032
Target:  5'- gGGGACGGGCCGgggggacgggggGACgGGCCggggggaCGgGGGg -3'
miRNA:   3'- -CCCUGCUCGGU------------UUGgUCGGg------GCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 6622 0.7 0.584641
Target:  5'- gGGGACGGGCCGggggGACgGgGCCCCGa--- -3'
miRNA:   3'- -CCCUGCUCGGU----UUGgU-CGGGGCgucc -5'
5146 3' -58.7 NC_001798.1 + 8792 0.66 0.830669
Target:  5'- cGGGACGGGCgAGGCCgcgggguaaagcGGCaCCgacgCGCuGGa -3'
miRNA:   3'- -CCCUGCUCGgUUUGG------------UCG-GG----GCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 9716 0.66 0.805514
Target:  5'- -cGACGGGCuCGGGCUGGCgCUGgGGGa -3'
miRNA:   3'- ccCUGCUCG-GUUUGGUCGgGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 10471 0.67 0.782625
Target:  5'- cGGACaGGGUguaCAGACCgcuguccgucuccagGGCCCCGUAGa -3'
miRNA:   3'- cCCUG-CUCG---GUUUGG---------------UCGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 11187 0.72 0.479191
Target:  5'- uGGGGCGGGCCu-GCCGaacGgCCCGCuuGGa -3'
miRNA:   3'- -CCCUGCUCGGuuUGGU---CgGGGCGu-CC- -5'
5146 3' -58.7 NC_001798.1 + 11397 0.67 0.741998
Target:  5'- -aGGCGGGCCAuGGCC-GCCUcguugaccgCGCAGGa -3'
miRNA:   3'- ccCUGCUCGGU-UUGGuCGGG---------GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 12266 0.69 0.654198
Target:  5'- cGGACGA-CCAGGCCGGUggCGCAGa -3'
miRNA:   3'- cCCUGCUcGGUUUGGUCGggGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 14365 0.67 0.741998
Target:  5'- cGGGGCcGGUgGGugCGGCCCCaacaGCAGc -3'
miRNA:   3'- -CCCUGcUCGgUUugGUCGGGG----CGUCc -5'
5146 3' -58.7 NC_001798.1 + 15040 0.67 0.787989
Target:  5'- cGGGAgcgUGGGgCGGAUgGGCCCggggcgCGCGGGg -3'
miRNA:   3'- -CCCU---GCUCgGUUUGgUCGGG------GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 15200 0.68 0.713245
Target:  5'- gGGGcugGCGAGCCGGGgggAGCgUCCGCGGGu -3'
miRNA:   3'- -CCC---UGCUCGGUUUgg-UCG-GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 15919 0.7 0.61439
Target:  5'- gGGGGCGua-CGGACCgucaucuagGGCCCCGgGGGc -3'
miRNA:   3'- -CCCUGCucgGUUUGG---------UCGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 16156 0.66 0.822445
Target:  5'- gGGGGCaccGAGCgccACgGGCggCCCGCGGGg -3'
miRNA:   3'- -CCCUG---CUCGguuUGgUCG--GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 16238 0.67 0.741998
Target:  5'- cGGugGGGCCgGGGCCcuCCCCGCc-- -3'
miRNA:   3'- cCCugCUCGG-UUUGGucGGGGCGucc -5'
5146 3' -58.7 NC_001798.1 + 16566 0.67 0.787989
Target:  5'- -cGGCGGcGCCAgcaaAACCAGCCCCcccGUgAGGa -3'
miRNA:   3'- ccCUGCU-CGGU----UUGGUCGGGG---CG-UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.