miRNA display CGI


Results 21 - 40 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 6352 0.74 0.360207
Target:  5'- gGGGACGGGCCGggggGACgGGCCggggggCCGgGGGg -3'
miRNA:   3'- -CCCUGCUCGGU----UUGgUCGG------GGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 153939 0.74 0.360207
Target:  5'- uGGGGCa--CCAgcAGCCAGCgCCGCAGGa -3'
miRNA:   3'- -CCCUGcucGGU--UUGGUCGgGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 123391 0.74 0.367215
Target:  5'- -aGGCGAcGCCAGGCCccccgggagccgcGGCCCCGCcGGg -3'
miRNA:   3'- ccCUGCU-CGGUUUGG-------------UCGGGGCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 93675 0.74 0.367999
Target:  5'- cGGAcuCGGGCCAGACCGacguGCCCUGCAa- -3'
miRNA:   3'- cCCU--GCUCGGUUUGGU----CGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 77563 0.74 0.371148
Target:  5'- aGGGACG-GCCGggGACCauucccccagcgggcGcGCCCUGCAGGa -3'
miRNA:   3'- -CCCUGCuCGGU--UUGG---------------U-CGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2537 0.74 0.375905
Target:  5'- cGGGGCGGG--GGGCgCGGCCCCcGCGGGa -3'
miRNA:   3'- -CCCUGCUCggUUUG-GUCGGGG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2482 0.74 0.375905
Target:  5'- -cGGCGGGCCggcGggUCAGCgCCGCGGGg -3'
miRNA:   3'- ccCUGCUCGG---UuuGGUCGgGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 27490 0.74 0.383926
Target:  5'- gGGGGCGGGCgCGGGaaaaaAGCCgCGCGGGg -3'
miRNA:   3'- -CCCUGCUCG-GUUUgg---UCGGgGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2273 0.74 0.383926
Target:  5'- cGGGGCGgcgcagcgcgcGGCCAGcgagGCCAGCgCgCGCGGGu -3'
miRNA:   3'- -CCCUGC-----------UCGGUU----UGGUCG-GgGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 35547 0.74 0.392059
Target:  5'- cGGGGCGuuGCCGGcCCGGCCCgGCcccGGa -3'
miRNA:   3'- -CCCUGCu-CGGUUuGGUCGGGgCGu--CC- -5'
5146 3' -58.7 NC_001798.1 + 115520 0.74 0.392059
Target:  5'- cGGGGCGuacgucgcGGCCccGGCCGGCCCCgGCGcGGa -3'
miRNA:   3'- -CCCUGC--------UCGGu-UUGGUCGGGG-CGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 75460 0.74 0.392059
Target:  5'- gGGGugGccGGCCcGGCCgcGGCCCUGCuGGa -3'
miRNA:   3'- -CCCugC--UCGGuUUGG--UCGGGGCGuCC- -5'
5146 3' -58.7 NC_001798.1 + 6261 0.73 0.408658
Target:  5'- gGGGACGGGCCGggggGACgGGCCggggggacgggCCGgGGGg -3'
miRNA:   3'- -CCCUGCUCGGU----UUGgUCGG-----------GGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 133326 0.73 0.408658
Target:  5'- gGGGuCGGGgCGAACCuuuAGCCCCG-AGGa -3'
miRNA:   3'- -CCCuGCUCgGUUUGG---UCGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 141461 0.73 0.41712
Target:  5'- gGGGcuGCGAGCUgcuGACCGGCUCgccgCGCGGGg -3'
miRNA:   3'- -CCC--UGCUCGGu--UUGGUCGGG----GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 111605 0.73 0.41712
Target:  5'- cGGGGCG-GCCu--CCuggAGCCCCGgGGGc -3'
miRNA:   3'- -CCCUGCuCGGuuuGG---UCGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 27559 0.73 0.41712
Target:  5'- aGGGGCGGcGCCcgcgggggagcGGCCGGCUCCGgGGGa -3'
miRNA:   3'- -CCCUGCU-CGGu----------UUGGUCGGGGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 61891 0.73 0.425689
Target:  5'- cGGGCGcGCCcucgAAGCCGGCCCUGCGc- -3'
miRNA:   3'- cCCUGCuCGG----UUUGGUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 35005 0.73 0.425689
Target:  5'- cGGGGCGcaccucggcGGCCAAGCCccGGCCCgCcCGGGg -3'
miRNA:   3'- -CCCUGC---------UCGGUUUGG--UCGGG-GcGUCC- -5'
5146 3' -58.7 NC_001798.1 + 61853 0.73 0.425689
Target:  5'- gGGGaacGCGGGCCGccGGcCCAGCCCgGCGGc -3'
miRNA:   3'- -CCC---UGCUCGGU--UU-GGUCGGGgCGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.