miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 124717 1.11 0.001256
Target:  5'- cGGGACGAGCCAAACCAGCCCCGCAGGc -3'
miRNA:   3'- -CCCUGCUCGGUUUGGUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 120627 0.84 0.098375
Target:  5'- aGGACGGGCCGGucgucGCCGGUCUCGCGGGc -3'
miRNA:   3'- cCCUGCUCGGUU-----UGGUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 51266 0.81 0.143942
Target:  5'- cGGGACaGcGCCAucacGCgGGCCCCGCGGGg -3'
miRNA:   3'- -CCCUG-CuCGGUu---UGgUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 86647 0.79 0.18886
Target:  5'- aGGGGCGGGUCuguaUAGCCCUGCGGGc -3'
miRNA:   3'- -CCCUGCUCGGuuugGUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 146488 0.79 0.18886
Target:  5'- cGGGGcCGGGCCGGGCCGgcaacGCCCCGCGccGGc -3'
miRNA:   3'- -CCCU-GCUCGGUUUGGU-----CGGGGCGU--CC- -5'
5146 3' -58.7 NC_001798.1 + 137411 0.79 0.206547
Target:  5'- cGGGAuCGGGUCcggguccgggaccgGGACCcGCCCCGCGGGg -3'
miRNA:   3'- -CCCU-GCUCGG--------------UUUGGuCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 94987 0.78 0.239953
Target:  5'- aGGcGGCG-GCC--GCCugGGCCCCGCAGGg -3'
miRNA:   3'- -CC-CUGCuCGGuuUGG--UCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 22117 0.77 0.245653
Target:  5'- cGGGGCGA-CCucGCCGGCCCCuuuggggccgGCGGGg -3'
miRNA:   3'- -CCCUGCUcGGuuUGGUCGGGG----------CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 35393 0.77 0.245653
Target:  5'- gGGcGugGGGCCGGccGCCGGaugCCCGCGGGg -3'
miRNA:   3'- -CC-CugCUCGGUU--UGGUCg--GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 3015 0.76 0.282233
Target:  5'- gGGGcgcgGCGGGCCGggcuccGGCCAGCCCCgGCAcGGc -3'
miRNA:   3'- -CCC----UGCUCGGU------UUGGUCGGGG-CGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 31899 0.76 0.288734
Target:  5'- aGGcGCGGGUCGGACUcgGGCCCCGCGGc -3'
miRNA:   3'- -CCcUGCUCGGUUUGG--UCGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 102499 0.76 0.295351
Target:  5'- gGGGACGGGCCGGcGCCGGggugUCCGUAGGc -3'
miRNA:   3'- -CCCUGCUCGGUU-UGGUCg---GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 1146 0.76 0.295351
Target:  5'- -cGGCG-GCguGGCCAGCCCCGCGGcGg -3'
miRNA:   3'- ccCUGCuCGguUUGGUCGGGGCGUC-C- -5'
5146 3' -58.7 NC_001798.1 + 146420 0.76 0.308939
Target:  5'- cGGGGCGAGCCGGGCagagugcggAGCCCC-CGGa -3'
miRNA:   3'- -CCCUGCUCGGUUUGg--------UCGGGGcGUCc -5'
5146 3' -58.7 NC_001798.1 + 154422 0.75 0.322999
Target:  5'- cGGGCGGGCggCAGGgCAGCCCCGCGc- -3'
miRNA:   3'- cCCUGCUCG--GUUUgGUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 136606 0.75 0.322999
Target:  5'- gGGGACGGGCCcgggcAACUgcaacgcagAGCUCUGCGGGg -3'
miRNA:   3'- -CCCUGCUCGGu----UUGG---------UCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 84 0.75 0.322999
Target:  5'- cGGGCGGGCggCAGGgCAGCCCCGCGc- -3'
miRNA:   3'- cCCUGCUCG--GUUUgGUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 48343 0.75 0.32948
Target:  5'- aGGACGucgacgcgaccgcGGCCGcccggGGCC-GCCCCGCGGGg -3'
miRNA:   3'- cCCUGC-------------UCGGU-----UUGGuCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 142194 0.75 0.344972
Target:  5'- cGGGGuCGAgcgcGCCAGgaccGCCuGCCCCGCGGa -3'
miRNA:   3'- -CCCU-GCU----CGGUU----UGGuCGGGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 122091 0.75 0.344972
Target:  5'- -uGGCGGGCCugGAGCC-GCCCgGCGGGg -3'
miRNA:   3'- ccCUGCUCGG--UUUGGuCGGGgCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.