miRNA display CGI


Results 1 - 20 of 277 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 84 0.75 0.322999
Target:  5'- cGGGCGGGCggCAGGgCAGCCCCGCGc- -3'
miRNA:   3'- cCCUGCUCG--GUUUgGUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 637 0.67 0.741998
Target:  5'- aGGucaGAGCCccAGACC--CCCCGCGGGc -3'
miRNA:   3'- cCCug-CUCGG--UUUGGucGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 1146 0.76 0.295351
Target:  5'- -cGGCG-GCguGGCCAGCCCCGCGGcGg -3'
miRNA:   3'- ccCUGCuCGguUUGGUCGGGGCGUC-C- -5'
5146 3' -58.7 NC_001798.1 + 1252 0.68 0.682919
Target:  5'- gGGGGCGGGCCcGcguccgcgucgucGCgCAGCaCCaGCGGGg -3'
miRNA:   3'- -CCCUGCUCGGuU-------------UG-GUCG-GGgCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2026 0.66 0.805514
Target:  5'- cGGGcccGCaGAGCCGGuuGCCcagGGCCgCCaGCAGGc -3'
miRNA:   3'- -CCC---UG-CUCGGUU--UGG---UCGG-GG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2096 0.68 0.732493
Target:  5'- cGGGGgGGGCCcgcccCCGGCgcggCCCGCGGc -3'
miRNA:   3'- -CCCUgCUCGGuuu--GGUCG----GGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 2273 0.74 0.383926
Target:  5'- cGGGGCGgcgcagcgcgcGGCCAGcgagGCCAGCgCgCGCGGGu -3'
miRNA:   3'- -CCCUGC-----------UCGGUU----UGGUCG-GgGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2345 0.72 0.492148
Target:  5'- gGGGAagagcgggugguccgUGAGCUcgGCCAcGgCCCGCGGGg -3'
miRNA:   3'- -CCCU---------------GCUCGGuuUGGU-CgGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2444 0.7 0.604452
Target:  5'- cGGcuGGCGGcGCC-AGCC-GCCCUGCGGGu -3'
miRNA:   3'- -CC--CUGCU-CGGuUUGGuCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2482 0.74 0.375905
Target:  5'- -cGGCGGGCCggcGggUCAGCgCCGCGGGg -3'
miRNA:   3'- ccCUGCUCGG---UuuGGUCGgGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2537 0.74 0.375905
Target:  5'- cGGGGCGGG--GGGCgCGGCCCCcGCGGGa -3'
miRNA:   3'- -CCCUGCUCggUUUG-GUCGGGG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 2798 0.67 0.779023
Target:  5'- cGGGcuccGCGGcagcGCCGGGCCcagGGCCCCGgcgacCAGGc -3'
miRNA:   3'- -CCC----UGCU----CGGUUUGG---UCGGGGC-----GUCC- -5'
5146 3' -58.7 NC_001798.1 + 2964 0.71 0.532893
Target:  5'- cGGGGCGcGUCGgcgugcggcggggcGGCCGG-CCCGCGGGc -3'
miRNA:   3'- -CCCUGCuCGGU--------------UUGGUCgGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 3015 0.76 0.282233
Target:  5'- gGGGcgcgGCGGGCCGggcuccGGCCAGCCCCgGCAcGGc -3'
miRNA:   3'- -CCC----UGCUCGGU------UUGGUCGGGG-CGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 3319 0.68 0.732493
Target:  5'- cGGGGCGgcGGCgGcGGCgGGCuuCCCGCGGGc -3'
miRNA:   3'- -CCCUGC--UCGgU-UUGgUCG--GGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 3790 0.72 0.479191
Target:  5'- cGGGGCGcccgaGGCCucGAACCGGgCCCGCGc- -3'
miRNA:   3'- -CCCUGC-----UCGG--UUUGGUCgGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 3893 0.7 0.594533
Target:  5'- gGGGGCGGG--GGGCCGGCCCCGgGc- -3'
miRNA:   3'- -CCCUGCUCggUUUGGUCGGGGCgUcc -5'
5146 3' -58.7 NC_001798.1 + 4096 0.72 0.497751
Target:  5'- cGGGcCGGGgCGGGCuCGGCCCUggGCGGGc -3'
miRNA:   3'- -CCCuGCUCgGUUUG-GUCGGGG--CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 4132 0.69 0.674032
Target:  5'- cGGGGCGccGCCc--CCggGGCCCuCGCGGGc -3'
miRNA:   3'- -CCCUGCu-CGGuuuGG--UCGGG-GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 4338 0.66 0.838721
Target:  5'- -uGAUGAGUCAGaggcgGCCgAGCgCCgGCGGGg -3'
miRNA:   3'- ccCUGCUCGGUU-----UGG-UCG-GGgCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.