miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 3' -58.7 NC_001798.1 + 154422 0.75 0.322999
Target:  5'- cGGGCGGGCggCAGGgCAGCCCCGCGc- -3'
miRNA:   3'- cCCUGCUCG--GUUUgGUCGGGGCGUcc -5'
5146 3' -58.7 NC_001798.1 + 154099 0.72 0.507151
Target:  5'- cGGGGCGcGGCCGGcGCCGGggaCCCCggcgGCGGGg -3'
miRNA:   3'- -CCCUGC-UCGGUU-UGGUC---GGGG----CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 153939 0.74 0.360207
Target:  5'- uGGGGCa--CCAgcAGCCAGCgCCGCAGGa -3'
miRNA:   3'- -CCCUGcucGGU--UUGGUCGgGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 153072 0.72 0.460075
Target:  5'- uGGGGCGGGCgGAgcggcggggcggcGCCgGGCCCuCGCGGa -3'
miRNA:   3'- -CCCUGCUCGgUU-------------UGG-UCGGG-GCGUCc -5'
5146 3' -58.7 NC_001798.1 + 153007 0.69 0.653204
Target:  5'- cGGGGCGGucGCCGGGgcggaguCCGGgCCCGCGcGGc -3'
miRNA:   3'- -CCCUGCU--CGGUUU-------GGUCgGGGCGU-CC- -5'
5146 3' -58.7 NC_001798.1 + 152479 0.66 0.825755
Target:  5'- aGGGGCGGcauuuacgauucccCCAAuaGCCGcgcGCCCCgGCGGGg -3'
miRNA:   3'- -CCCUGCUc-------------GGUU--UGGU---CGGGG-CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150929 0.7 0.584641
Target:  5'- gGGGGCGGGCgGGACgUAGUCCacuGCAGa -3'
miRNA:   3'- -CCCUGCUCGgUUUG-GUCGGGg--CGUCc -5'
5146 3' -58.7 NC_001798.1 + 150858 0.66 0.796822
Target:  5'- cGGGucgcgGCGGGCUggGa-GGUUCCGCGGGu -3'
miRNA:   3'- -CCC-----UGCUCGGuuUggUCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150809 0.72 0.488429
Target:  5'- cGGGGCGccGCCGcuGCUgcuGCUCCGCGGGg -3'
miRNA:   3'- -CCCUGCu-CGGUu-UGGu--CGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150622 0.66 0.830669
Target:  5'- gGGGGCuccuGGGCCGcgcggGGCU-GUCUCGCGGGg -3'
miRNA:   3'- -CCCUG----CUCGGU-----UUGGuCGGGGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150448 0.7 0.57478
Target:  5'- cGGACGcGCgGGGCgaCGGCCgCGCGGGg -3'
miRNA:   3'- cCCUGCuCGgUUUG--GUCGGgGCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 150377 0.66 0.822445
Target:  5'- cGGGcggcGCGGGCCcGGCCGcguccGCgCUCGCAGa -3'
miRNA:   3'- -CCC----UGCUCGGuUUGGU-----CG-GGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 150170 0.72 0.507151
Target:  5'- gGGGGCGGGCC--GCC-GCCCCcuccgcggcGUGGGg -3'
miRNA:   3'- -CCCUGCUCGGuuUGGuCGGGG---------CGUCC- -5'
5146 3' -58.7 NC_001798.1 + 149959 0.72 0.487502
Target:  5'- uGGGACGAcggagacGCCGAcggggGCgCGGCgCCCGCGGa -3'
miRNA:   3'- -CCCUGCU-------CGGUU-----UG-GUCG-GGGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 149795 0.7 0.57478
Target:  5'- cGGACGcgacGCUcccACCAGCCCCGCccgcagAGGa -3'
miRNA:   3'- cCCUGCu---CGGuu-UGGUCGGGGCG------UCC- -5'
5146 3' -58.7 NC_001798.1 + 148384 0.67 0.769933
Target:  5'- aGGGGCGGGCguGGCgGGCaggugUGCGGGc -3'
miRNA:   3'- -CCCUGCUCGguUUGgUCGgg---GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 148277 0.67 0.769933
Target:  5'- aGGGGCGGGCguGGCgGGCaggugUGCGGGc -3'
miRNA:   3'- -CCCUGCUCGguUUGgUCGgg---GCGUCC- -5'
5146 3' -58.7 NC_001798.1 + 147021 0.68 0.703519
Target:  5'- cGGGCGGGCCGGGgCuuGGCCgCCG-AGGu -3'
miRNA:   3'- cCCUGCUCGGUUUgG--UCGG-GGCgUCC- -5'
5146 3' -58.7 NC_001798.1 + 146573 0.7 0.624341
Target:  5'- -aGACGGGCCGcgGGCCAGCagacgggCCGCGGc -3'
miRNA:   3'- ccCUGCUCGGU--UUGGUCGg------GGCGUCc -5'
5146 3' -58.7 NC_001798.1 + 146488 0.79 0.18886
Target:  5'- cGGGGcCGGGCCGGGCCGgcaacGCCCCGCGccGGc -3'
miRNA:   3'- -CCCU-GCUCGGUUUGGU-----CGGGGCGU--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.