miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 151619 0.66 0.547766
Target:  5'- -gCCGGGCcgggggcguGGCCGcguccaucaGGCCCGCCu---- -3'
miRNA:   3'- ggGGCCCG---------UCGGC---------CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 31859 0.66 0.547766
Target:  5'- cCCCCacgccgcggaggGGGCGGC--GGCCCGCCc---- -3'
miRNA:   3'- -GGGG------------CCCGUCGgcCCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 2109 0.66 0.546813
Target:  5'- cCCCCGGcGCGGcCCGcGGCCagguccuCGCCc---- -3'
miRNA:   3'- -GGGGCC-CGUC-GGC-CCGG-------GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 32355 0.66 0.538258
Target:  5'- gCCacgcggaGGGCGGCCccgagcccgGGGCCCGCgAc--- -3'
miRNA:   3'- gGGg------CCCGUCGG---------CCCGGGCGgUaaau -5'
5147 3' -63.5 NC_001798.1 + 3888 0.66 0.538258
Target:  5'- gCCCCGGG-GGCgggGGGCCgGCCc---- -3'
miRNA:   3'- -GGGGCCCgUCGg--CCCGGgCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 24721 0.66 0.538258
Target:  5'- gCCCgCGGGCgcGGCCGc-CCCGCCGc--- -3'
miRNA:   3'- -GGG-GCCCG--UCGGCccGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 28716 0.66 0.538258
Target:  5'- gCCCGaGGCccgAGCuCGGGCCCGagcCCGa--- -3'
miRNA:   3'- gGGGC-CCG---UCG-GCCCGGGC---GGUaaau -5'
5147 3' -63.5 NC_001798.1 + 43079 0.66 0.538258
Target:  5'- gCgCCGGGC--UCGGGCgCCGCCGc--- -3'
miRNA:   3'- -GgGGCCCGucGGCCCG-GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 83407 0.66 0.538258
Target:  5'- aCCCCGaGGUccgucagcGCCGcGGCCUGCCc---- -3'
miRNA:   3'- -GGGGC-CCGu-------CGGC-CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 98625 0.66 0.538258
Target:  5'- gCCUCGGGCGG-CGuGGCCgCGaCCGUc-- -3'
miRNA:   3'- -GGGGCCCGUCgGC-CCGG-GC-GGUAaau -5'
5147 3' -63.5 NC_001798.1 + 4020 0.66 0.538258
Target:  5'- gCCCGuGGC-GUCGcGGCCgGCCAc--- -3'
miRNA:   3'- gGGGC-CCGuCGGC-CCGGgCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 87750 0.66 0.538258
Target:  5'- aCCCCGcGGCccugAGCCGcgcGGCCaCGUCGUc-- -3'
miRNA:   3'- -GGGGC-CCG----UCGGC---CCGG-GCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 24483 0.66 0.53731
Target:  5'- cCCUgGGGCGccugagcGCCGcGCCCGCCu---- -3'
miRNA:   3'- -GGGgCCCGU-------CGGCcCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 135305 0.67 0.528806
Target:  5'- gCCCUGGGC--CCGGGCCgUGCUg---- -3'
miRNA:   3'- -GGGGCCCGucGGCCCGG-GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 1506 0.67 0.528806
Target:  5'- gCCCGaGGCGGC--GGCCCgGCCGUc-- -3'
miRNA:   3'- gGGGC-CCGUCGgcCCGGG-CGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 3665 0.67 0.528806
Target:  5'- uCCCCGGGCGccacGCgCGGGUUCuggaGCCAc--- -3'
miRNA:   3'- -GGGGCCCGU----CG-GCCCGGG----CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 153676 0.67 0.528806
Target:  5'- uCCgCGGGCGgggacGCgGGGgCCGCCGc--- -3'
miRNA:   3'- -GGgGCCCGU-----CGgCCCgGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 85252 0.67 0.519417
Target:  5'- cCCCCGcGGCcGCgCGGGgCCGCgCGc--- -3'
miRNA:   3'- -GGGGC-CCGuCG-GCCCgGGCG-GUaaau -5'
5147 3' -63.5 NC_001798.1 + 25145 0.67 0.519417
Target:  5'- gCCCCGcGGCcGCCccucccgcggGGGCCgCGCCc---- -3'
miRNA:   3'- -GGGGC-CCGuCGG----------CCCGG-GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 52983 0.67 0.510094
Target:  5'- -aCCGGGCuGGgC-GGCCCGCCAc--- -3'
miRNA:   3'- ggGGCCCG-UCgGcCCGGGCGGUaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.