miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 134359 0.66 0.566935
Target:  5'- ---aGGGCGucGUgGGGCCCGCCGg--- -3'
miRNA:   3'- ggggCCCGU--CGgCCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 146637 0.66 0.566935
Target:  5'- cCCCCGcgggcauccGGCGGCCGGccccacGCCCuuCCAUUa- -3'
miRNA:   3'- -GGGGC---------CCGUCGGCC------CGGGc-GGUAAau -5'
5147 3' -63.5 NC_001798.1 + 98484 0.66 0.565972
Target:  5'- cCCCCagacuagcGGGCGGCgggagCGacgcgcccccguaGGCCCGCCAUg-- -3'
miRNA:   3'- -GGGG--------CCCGUCG-----GC-------------CCGGGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 5893 0.66 0.565972
Target:  5'- uCCCgCGGGCuccgccccgAGgCGGGCCCggacggggggcggGCCGUUc- -3'
miRNA:   3'- -GGG-GCCCG---------UCgGCCCGGG-------------CGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 48987 0.66 0.564048
Target:  5'- cCCCCaGGcCAGCCGGGggucccaagaacacCCCaGCCGc--- -3'
miRNA:   3'- -GGGGcCC-GUCGGCCC--------------GGG-CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 29794 0.66 0.557327
Target:  5'- cUCCCGGGCGGaCCccGGCCCcgagcgGCCGc--- -3'
miRNA:   3'- -GGGGCCCGUC-GGc-CCGGG------CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 69069 0.66 0.557327
Target:  5'- gCCCGcgcgcgcGCAGCCGcucucGGCCCGCCc---- -3'
miRNA:   3'- gGGGCc------CGUCGGC-----CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 106019 0.66 0.557327
Target:  5'- uCUCUGGuGgGGCCGGaugaCCCGCCGUg-- -3'
miRNA:   3'- -GGGGCC-CgUCGGCCc---GGGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 126312 0.66 0.557327
Target:  5'- uCUCCGGaGCccgccCCGGGuCCCGCCGc--- -3'
miRNA:   3'- -GGGGCC-CGuc---GGCCC-GGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 146579 0.66 0.557327
Target:  5'- gCCgCGGGcCAGCagaCGGGCCgcggCGCCAg--- -3'
miRNA:   3'- -GGgGCCC-GUCG---GCCCGG----GCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 147906 0.66 0.557327
Target:  5'- uUCCCGGGgGggcaggcgcggGUCGGGCCCGUa----- -3'
miRNA:   3'- -GGGGCCCgU-----------CGGCCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 25814 0.66 0.557327
Target:  5'- uCCUgGGGCugcuGGCCGGcGCCUGCgAc--- -3'
miRNA:   3'- -GGGgCCCG----UCGGCC-CGGGCGgUaaau -5'
5147 3' -63.5 NC_001798.1 + 60152 0.66 0.557327
Target:  5'- -aCCGucuuggcguuGGCGGCCGcuuGGCCCGCCu---- -3'
miRNA:   3'- ggGGC----------CCGUCGGC---CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 146428 0.66 0.547766
Target:  5'- -gCCGGGCAGagugcggagcccCCGGaGCCCGCgGc--- -3'
miRNA:   3'- ggGGCCCGUC------------GGCC-CGGGCGgUaaau -5'
5147 3' -63.5 NC_001798.1 + 27958 0.66 0.547766
Target:  5'- gCCCCGGcGCuccAGCCGuGCCgCGCCc---- -3'
miRNA:   3'- -GGGGCC-CG---UCGGCcCGG-GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 66702 0.66 0.547766
Target:  5'- -aCUGGGUAGCCgGGGUCCGUUc---- -3'
miRNA:   3'- ggGGCCCGUCGG-CCCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 117191 0.66 0.547766
Target:  5'- aCCCCGGGU--UCGGGUucaCCGUCGUg-- -3'
miRNA:   3'- -GGGGCCCGucGGCCCG---GGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 121998 0.66 0.547766
Target:  5'- cCUCCGGcGUcGCCucgGGGCuCCGCCAg--- -3'
miRNA:   3'- -GGGGCC-CGuCGG---CCCG-GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 151619 0.66 0.547766
Target:  5'- -gCCGGGCcgggggcguGGCCGcguccaucaGGCCCGCCu---- -3'
miRNA:   3'- ggGGCCCG---------UCGGC---------CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 139410 0.66 0.547766
Target:  5'- nCCCCacaGCAGcCCGGGgccagaCCCGCCGUg-- -3'
miRNA:   3'- -GGGGcc-CGUC-GGCCC------GGGCGGUAaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.