miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 58652 0.72 0.245378
Target:  5'- uCCCCGgcGGCGGuugucCCGaGGCCCGCCAc--- -3'
miRNA:   3'- -GGGGC--CCGUC-----GGC-CCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 23574 0.72 0.245378
Target:  5'- gCCCCGGGggcggcgcccCGGCCGaGCCCGCCc---- -3'
miRNA:   3'- -GGGGCCC----------GUCGGCcCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 135765 0.72 0.245378
Target:  5'- uCCUCcGGCGGCCGgccgccGGCCCGCCGg--- -3'
miRNA:   3'- -GGGGcCCGUCGGC------CCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 130239 0.72 0.251077
Target:  5'- gCCCGGGUcuCCGggcGGCCCGCCAc--- -3'
miRNA:   3'- gGGGCCCGucGGC---CCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 70427 0.72 0.256885
Target:  5'- uCCCCGGGCuGCUGGuGCaCCGCa----- -3'
miRNA:   3'- -GGGGCCCGuCGGCC-CG-GGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 129683 0.72 0.256885
Target:  5'- aCCCGGGC-GCCGGGgCC-CCAg--- -3'
miRNA:   3'- gGGGCCCGuCGGCCCgGGcGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 4114 0.72 0.262802
Target:  5'- gCCCUGGGCgggcucGGCCgGGGCgCCGCCc---- -3'
miRNA:   3'- -GGGGCCCG------UCGG-CCCG-GGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 31657 0.72 0.26883
Target:  5'- gCgCGGacGCGGCCGGGCCCGCg----- -3'
miRNA:   3'- gGgGCC--CGUCGGCCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 92152 0.72 0.26883
Target:  5'- cCCCCGGucGUcuuGCCGGGCCC-CCGUUc- -3'
miRNA:   3'- -GGGGCC--CGu--CGGCCCGGGcGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 154137 0.72 0.271272
Target:  5'- cCCCggcggcgggacauggCGGGCGGCUGGGCUCGgCGUa-- -3'
miRNA:   3'- -GGG---------------GCCCGUCGGCCCGGGCgGUAaau -5'
5147 3' -63.5 NC_001798.1 + 131343 0.72 0.274968
Target:  5'- gCCCCGGGCGcgacGUCGGcGCCCGgCGc--- -3'
miRNA:   3'- -GGGGCCCGU----CGGCC-CGGGCgGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25214 0.71 0.280588
Target:  5'- gCCCCGcGGCGcugacccGCC-GGCCCGCCGa--- -3'
miRNA:   3'- -GGGGC-CCGU-------CGGcCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 56244 0.71 0.281218
Target:  5'- -aCC-GGCGGCCGGGCCCgGCCc---- -3'
miRNA:   3'- ggGGcCCGUCGGCCCGGG-CGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 2010 0.71 0.294056
Target:  5'- gCCCaGGCGGCCguggcGGGCCCGCa----- -3'
miRNA:   3'- gGGGcCCGUCGG-----CCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 24676 0.71 0.294056
Target:  5'- gCCgGGGCuGGCCGgagcccGGCCCGCCGc--- -3'
miRNA:   3'- gGGgCCCG-UCGGC------CCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 120220 0.71 0.294056
Target:  5'- gCCCCGGGCcGuuGGccCCCGCCGa--- -3'
miRNA:   3'- -GGGGCCCGuCggCCc-GGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 20768 0.71 0.300644
Target:  5'- uCCCgCGGGgAGCgaCGGcGCCCGCCGc--- -3'
miRNA:   3'- -GGG-GCCCgUCG--GCC-CGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 47195 0.71 0.300644
Target:  5'- gCCgCCGGGuCAGCCuGaGCCCGCCcugUUGg -3'
miRNA:   3'- -GG-GGCCC-GUCGGcC-CGGGCGGua-AAU- -5'
5147 3' -63.5 NC_001798.1 + 72149 0.71 0.314162
Target:  5'- aCCCGGGCcggcGUCGGGCCCacgaugcagaugGCCGa--- -3'
miRNA:   3'- gGGGCCCGu---CGGCCCGGG------------CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 54651 0.71 0.314162
Target:  5'- cCCCCGagcagcggccGGCAGCCGcGGCgCGCCc---- -3'
miRNA:   3'- -GGGGC----------CCGUCGGC-CCGgGCGGuaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.