miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 124019 1.08 0.000732
Target:  5'- cCCCCGGGCAGCCGGGCCCGCCAUUUAg -3'
miRNA:   3'- -GGGGCCCGUCGGCCCGGGCGGUAAAU- -5'
5147 3' -63.5 NC_001798.1 + 121790 0.82 0.052768
Target:  5'- gUCUCGGGCggGGCCGGGCCgGCCGUUg- -3'
miRNA:   3'- -GGGGCCCG--UCGGCCCGGgCGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 105185 0.78 0.099978
Target:  5'- uCUCCGcGGCGGCgGGGCCCGCgGUg-- -3'
miRNA:   3'- -GGGGC-CCGUCGgCCCGGGCGgUAaau -5'
5147 3' -63.5 NC_001798.1 + 143814 0.78 0.105137
Target:  5'- gCCCGGGCGGCgCGcGGCCaGCCGUUg- -3'
miRNA:   3'- gGGGCCCGUCG-GC-CCGGgCGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 3003 0.78 0.107002
Target:  5'- gCCCCGGGCgcgggggcgcggcgGGCCGGGCuCCgGCCAg--- -3'
miRNA:   3'- -GGGGCCCG--------------UCGGCCCG-GG-CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25672 0.78 0.110546
Target:  5'- gCCCUGGGCaaccGGCucugCGGGCCCGCCAc--- -3'
miRNA:   3'- -GGGGCCCG----UCG----GCCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 123405 0.78 0.110546
Target:  5'- cCCCCGGG-AGCCGcGGcCCCGCCGg--- -3'
miRNA:   3'- -GGGGCCCgUCGGC-CC-GGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 84505 0.77 0.113348
Target:  5'- cCCCCGGGCGGCCgccguaGGGCuuccccauccCCGCCAUc-- -3'
miRNA:   3'- -GGGGCCCGUCGG------CCCG----------GGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 147017 0.77 0.122154
Target:  5'- cCCCCGGGCgGGCCGGGgcuuggCCGCCGa--- -3'
miRNA:   3'- -GGGGCCCG-UCGGCCCg-----GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 75996 0.75 0.158969
Target:  5'- gCCCCGGGC-GCCGGcggcagggccccguGCCCGCCc---- -3'
miRNA:   3'- -GGGGCCCGuCGGCC--------------CGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 91354 0.75 0.168095
Target:  5'- cCCCCGGGggaAGCCGGGCC-GCCc---- -3'
miRNA:   3'- -GGGGCCCg--UCGGCCCGGgCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 127945 0.74 0.180702
Target:  5'- gCCCCGGGCgaaaaGGCCcGGCCCGCg----- -3'
miRNA:   3'- -GGGGCCCG-----UCGGcCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 147242 0.74 0.19881
Target:  5'- gCCCCGGGgccCCGGGCCgCGCCGg--- -3'
miRNA:   3'- -GGGGCCCgucGGCCCGG-GCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 153017 0.73 0.213411
Target:  5'- gCCgGGGCGGaguCCGGGCCCGCgCGg--- -3'
miRNA:   3'- gGGgCCCGUC---GGCCCGGGCG-GUaaau -5'
5147 3' -63.5 NC_001798.1 + 150376 0.73 0.218479
Target:  5'- --gCGGGCGGCgCGGGCCCgGCCGc--- -3'
miRNA:   3'- gggGCCCGUCG-GCCCGGG-CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 95004 0.73 0.223649
Target:  5'- gCCCCgcaGGGCGGCgCGGGCCUggagGCCGg--- -3'
miRNA:   3'- -GGGG---CCCGUCG-GCCCGGG----CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 48119 0.73 0.223649
Target:  5'- cCCCCGGGUGGCCGGGUUCaaCAa--- -3'
miRNA:   3'- -GGGGCCCGUCGGCCCGGGcgGUaaau -5'
5147 3' -63.5 NC_001798.1 + 3830 0.73 0.225746
Target:  5'- gCCUCGGGCgccccccagaGGCCGGggcggcugucgcccaGCCCGCCGUa-- -3'
miRNA:   3'- -GGGGCCCG----------UCGGCC---------------CGGGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 23653 0.73 0.228923
Target:  5'- gCCUGGaGCGccGCCGGGCCCGCgCGg--- -3'
miRNA:   3'- gGGGCC-CGU--CGGCCCGGGCG-GUaaau -5'
5147 3' -63.5 NC_001798.1 + 74656 0.73 0.234302
Target:  5'- cCCCCGGGgGGCCucGGGCCCaCCc---- -3'
miRNA:   3'- -GGGGCCCgUCGG--CCCGGGcGGuaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.