miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 129 0.67 0.491664
Target:  5'- cCCCCGGaGcCGGCCgcucccccgcGGGCgCCGCCc---- -3'
miRNA:   3'- -GGGGCC-C-GUCGG----------CCCG-GGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 1506 0.67 0.528806
Target:  5'- gCCCGaGGCGGC--GGCCCgGCCGUc-- -3'
miRNA:   3'- gGGGC-CCGUCGgcCCGGG-CGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 2010 0.71 0.294056
Target:  5'- gCCCaGGCGGCCguggcGGGCCCGCa----- -3'
miRNA:   3'- gGGGcCCGUCGG-----CCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 2109 0.66 0.546813
Target:  5'- cCCCCGGcGCGGcCCGcGGCCagguccuCGCCc---- -3'
miRNA:   3'- -GGGGCC-CGUC-GGC-CCGG-------GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 2801 0.7 0.328134
Target:  5'- gCUCCGcGGCAgcGCCGGGCCCaggGCCc---- -3'
miRNA:   3'- -GGGGC-CCGU--CGGCCCGGG---CGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 2983 0.67 0.510094
Target:  5'- -gCgGGGCGGCC-GGCCCGCg----- -3'
miRNA:   3'- ggGgCCCGUCGGcCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 3003 0.78 0.107002
Target:  5'- gCCCCGGGCgcgggggcgcggcgGGCCGGGCuCCgGCCAg--- -3'
miRNA:   3'- -GGGGCCCG--------------UCGGCCCG-GG-CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 3665 0.67 0.528806
Target:  5'- uCCCCGGGCGccacGCgCGGGUUCuggaGCCAc--- -3'
miRNA:   3'- -GGGGCCCGU----CG-GCCCGGG----CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 3796 0.67 0.491664
Target:  5'- gCCCGaGGCcucgaaCCGGGCCCGCg----- -3'
miRNA:   3'- gGGGC-CCGuc----GGCCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 3830 0.73 0.225746
Target:  5'- gCCUCGGGCgccccccagaGGCCGGggcggcugucgcccaGCCCGCCGUa-- -3'
miRNA:   3'- -GGGGCCCG----------UCGGCC---------------CGGGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 3888 0.66 0.538258
Target:  5'- gCCCCGGG-GGCgggGGGCCgGCCc---- -3'
miRNA:   3'- -GGGGCCCgUCGg--CCCGGgCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 4020 0.66 0.538258
Target:  5'- gCCCGuGGC-GUCGcGGCCgGCCAc--- -3'
miRNA:   3'- gGGGC-CCGuCGGC-CCGGgCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 4114 0.72 0.262802
Target:  5'- gCCCUGGGCgggcucGGCCgGGGCgCCGCCc---- -3'
miRNA:   3'- -GGGGCCCG------UCGG-CCCG-GGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 4741 0.7 0.328134
Target:  5'- uCCCCGGaC-GCCGGGgCCGCCu---- -3'
miRNA:   3'- -GGGGCCcGuCGGCCCgGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 5893 0.66 0.565972
Target:  5'- uCCCgCGGGCuccgccccgAGgCGGGCCCggacggggggcggGCCGUUc- -3'
miRNA:   3'- -GGG-GCCCG---------UCgGCCCGGG-------------CGGUAAau -5'
5147 3' -63.5 NC_001798.1 + 11171 0.67 0.500842
Target:  5'- aCCacgauggGGGCGGUggggCGGGCCUGCCGa--- -3'
miRNA:   3'- gGGg------CCCGUCG----GCCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 18603 0.68 0.429805
Target:  5'- cCCCCGGGUccgcgcGCCGu-CCCGCCGUg-- -3'
miRNA:   3'- -GGGGCCCGu-----CGGCccGGGCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 20768 0.71 0.300644
Target:  5'- uCCCgCGGGgAGCgaCGGcGCCCGCCGc--- -3'
miRNA:   3'- -GGG-GCCCgUCG--GCC-CGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 21796 0.66 0.58627
Target:  5'- cCCCCGu----CCGGGCCCGCCu---- -3'
miRNA:   3'- -GGGGCccgucGGCCCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 21842 0.66 0.576584
Target:  5'- gCCCCGGGCAgggcGCCaGuGCUCGCa----- -3'
miRNA:   3'- -GGGGCCCGU----CGGcC-CGGGCGguaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.