Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5147 | 3' | -63.5 | NC_001798.1 | + | 129 | 0.67 | 0.491664 |
Target: 5'- cCCCCGGaGcCGGCCgcucccccgcGGGCgCCGCCc---- -3' miRNA: 3'- -GGGGCC-C-GUCGG----------CCCG-GGCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 1506 | 0.67 | 0.528806 |
Target: 5'- gCCCGaGGCGGC--GGCCCgGCCGUc-- -3' miRNA: 3'- gGGGC-CCGUCGgcCCGGG-CGGUAaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 2010 | 0.71 | 0.294056 |
Target: 5'- gCCCaGGCGGCCguggcGGGCCCGCa----- -3' miRNA: 3'- gGGGcCCGUCGG-----CCCGGGCGguaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 2109 | 0.66 | 0.546813 |
Target: 5'- cCCCCGGcGCGGcCCGcGGCCagguccuCGCCc---- -3' miRNA: 3'- -GGGGCC-CGUC-GGC-CCGG-------GCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 2801 | 0.7 | 0.328134 |
Target: 5'- gCUCCGcGGCAgcGCCGGGCCCaggGCCc---- -3' miRNA: 3'- -GGGGC-CCGU--CGGCCCGGG---CGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 2983 | 0.67 | 0.510094 |
Target: 5'- -gCgGGGCGGCC-GGCCCGCg----- -3' miRNA: 3'- ggGgCCCGUCGGcCCGGGCGguaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 3003 | 0.78 | 0.107002 |
Target: 5'- gCCCCGGGCgcgggggcgcggcgGGCCGGGCuCCgGCCAg--- -3' miRNA: 3'- -GGGGCCCG--------------UCGGCCCG-GG-CGGUaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 3665 | 0.67 | 0.528806 |
Target: 5'- uCCCCGGGCGccacGCgCGGGUUCuggaGCCAc--- -3' miRNA: 3'- -GGGGCCCGU----CG-GCCCGGG----CGGUaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 3796 | 0.67 | 0.491664 |
Target: 5'- gCCCGaGGCcucgaaCCGGGCCCGCg----- -3' miRNA: 3'- gGGGC-CCGuc----GGCCCGGGCGguaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 3830 | 0.73 | 0.225746 |
Target: 5'- gCCUCGGGCgccccccagaGGCCGGggcggcugucgcccaGCCCGCCGUa-- -3' miRNA: 3'- -GGGGCCCG----------UCGGCC---------------CGGGCGGUAaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 3888 | 0.66 | 0.538258 |
Target: 5'- gCCCCGGG-GGCgggGGGCCgGCCc---- -3' miRNA: 3'- -GGGGCCCgUCGg--CCCGGgCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 4020 | 0.66 | 0.538258 |
Target: 5'- gCCCGuGGC-GUCGcGGCCgGCCAc--- -3' miRNA: 3'- gGGGC-CCGuCGGC-CCGGgCGGUaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 4114 | 0.72 | 0.262802 |
Target: 5'- gCCCUGGGCgggcucGGCCgGGGCgCCGCCc---- -3' miRNA: 3'- -GGGGCCCG------UCGG-CCCG-GGCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 4741 | 0.7 | 0.328134 |
Target: 5'- uCCCCGGaC-GCCGGGgCCGCCu---- -3' miRNA: 3'- -GGGGCCcGuCGGCCCgGGCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 5893 | 0.66 | 0.565972 |
Target: 5'- uCCCgCGGGCuccgccccgAGgCGGGCCCggacggggggcggGCCGUUc- -3' miRNA: 3'- -GGG-GCCCG---------UCgGCCCGGG-------------CGGUAAau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 11171 | 0.67 | 0.500842 |
Target: 5'- aCCacgauggGGGCGGUggggCGGGCCUGCCGa--- -3' miRNA: 3'- gGGg------CCCGUCG----GCCCGGGCGGUaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 18603 | 0.68 | 0.429805 |
Target: 5'- cCCCCGGGUccgcgcGCCGu-CCCGCCGUg-- -3' miRNA: 3'- -GGGGCCCGu-----CGGCccGGGCGGUAaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 20768 | 0.71 | 0.300644 |
Target: 5'- uCCCgCGGGgAGCgaCGGcGCCCGCCGc--- -3' miRNA: 3'- -GGG-GCCCgUCG--GCC-CGGGCGGUaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 21796 | 0.66 | 0.58627 |
Target: 5'- cCCCCGu----CCGGGCCCGCCu---- -3' miRNA: 3'- -GGGGCccgucGGCCCGGGCGGuaaau -5' |
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5147 | 3' | -63.5 | NC_001798.1 | + | 21842 | 0.66 | 0.576584 |
Target: 5'- gCCCCGGGCAgggcGCCaGuGCUCGCa----- -3' miRNA: 3'- -GGGGCCCGU----CGGcC-CGGGCGguaaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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