miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 154467 0.67 0.491664
Target:  5'- cCCCCGGaGcCGGCCgcucccccgcGGGCgCCGCCc---- -3'
miRNA:   3'- -GGGGCC-C-GUCGG----------CCCG-GGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 154137 0.72 0.271272
Target:  5'- cCCCggcggcgggacauggCGGGCGGCUGGGCUCGgCGUa-- -3'
miRNA:   3'- -GGG---------------GCCCGUCGGCCCGGGCgGUAaau -5'
5147 3' -63.5 NC_001798.1 + 153676 0.67 0.528806
Target:  5'- uCCgCGGGCGgggacGCgGGGgCCGCCGc--- -3'
miRNA:   3'- -GGgGCCCGU-----CGgCCCgGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 153309 0.7 0.328134
Target:  5'- gCCCGGGCucgGGCuCGGGCCCGa------ -3'
miRNA:   3'- gGGGCCCG---UCG-GCCCGGGCgguaaau -5'
5147 3' -63.5 NC_001798.1 + 153017 0.73 0.213411
Target:  5'- gCCgGGGCGGaguCCGGGCCCGCgCGg--- -3'
miRNA:   3'- gGGgCCCGUC---GGCCCGGGCG-GUaaau -5'
5147 3' -63.5 NC_001798.1 + 152649 0.68 0.447023
Target:  5'- cCCgCCGGcGCGGCCcugaguGGuGCCCGCCc---- -3'
miRNA:   3'- -GG-GGCC-CGUCGG------CC-CGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 152361 0.66 0.58627
Target:  5'- uCUCCGGGUcuccuccucccGCCGGGC-CGCCGc--- -3'
miRNA:   3'- -GGGGCCCGu----------CGGCCCGgGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 152261 0.67 0.491664
Target:  5'- gCCCGGGagcucguGCCGGGCCgGgguuCCAUg-- -3'
miRNA:   3'- gGGGCCCgu-----CGGCCCGGgC----GGUAaau -5'
5147 3' -63.5 NC_001798.1 + 151619 0.66 0.547766
Target:  5'- -gCCGGGCcgggggcguGGCCGcguccaucaGGCCCGCCu---- -3'
miRNA:   3'- ggGGCCCG---------UCGGC---------CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 150376 0.73 0.218479
Target:  5'- --gCGGGCGGCgCGGGCCCgGCCGc--- -3'
miRNA:   3'- gggGCCCGUCG-GCCCGGG-CGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 149678 0.71 0.321091
Target:  5'- gCCCCGGGC--UCGGGgCCGCCc---- -3'
miRNA:   3'- -GGGGCCCGucGGCCCgGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 149468 0.66 0.576584
Target:  5'- cUCCaCGcGGgGGCCGcGGCCCGCa----- -3'
miRNA:   3'- -GGG-GC-CCgUCGGC-CCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 148087 0.69 0.380592
Target:  5'- -gCCGGG-GGCCGGGgCCGCUAg--- -3'
miRNA:   3'- ggGGCCCgUCGGCCCgGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 147906 0.66 0.557327
Target:  5'- uUCCCGGGgGggcaggcgcggGUCGGGCCCGUa----- -3'
miRNA:   3'- -GGGGCCCgU-----------CGGCCCGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 147295 0.7 0.34256
Target:  5'- cUCCCGGGCcGCCccgcucccGGGCCCGaCCc---- -3'
miRNA:   3'- -GGGGCCCGuCGG--------CCCGGGC-GGuaaau -5'
5147 3' -63.5 NC_001798.1 + 147242 0.74 0.19881
Target:  5'- gCCCCGGGgccCCGGGCCgCGCCGg--- -3'
miRNA:   3'- -GGGGCCCgucGGCCCGG-GCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 147198 0.67 0.510094
Target:  5'- cCCCCGcccGGCGGuccggcCCGGGCCC-CCGg--- -3'
miRNA:   3'- -GGGGC---CCGUC------GGCCCGGGcGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 147162 0.67 0.482565
Target:  5'- gUCCCGGGUAGCC--GCCCGgCGc--- -3'
miRNA:   3'- -GGGGCCCGUCGGccCGGGCgGUaaau -5'
5147 3' -63.5 NC_001798.1 + 147017 0.77 0.122154
Target:  5'- cCCCCGGGCgGGCCGGGgcuuggCCGCCGa--- -3'
miRNA:   3'- -GGGGCCCG-UCGGCCCg-----GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 146637 0.66 0.566935
Target:  5'- cCCCCGcgggcauccGGCGGCCGGccccacGCCCuuCCAUUa- -3'
miRNA:   3'- -GGGGC---------CCGUCGGCC------CGGGc-GGUAAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.