miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 3' -63.5 NC_001798.1 + 21979 0.66 0.576584
Target:  5'- gCCCCGGGCAgggcGCCaGcGCUCGCa----- -3'
miRNA:   3'- -GGGGCCCGU----CGGcC-CGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 23215 0.68 0.421344
Target:  5'- aCgCGGGCcGCUGGGUCCGCgGa--- -3'
miRNA:   3'- gGgGCCCGuCGGCCCGGGCGgUaaau -5'
5147 3' -63.5 NC_001798.1 + 23574 0.72 0.245378
Target:  5'- gCCCCGGGggcggcgcccCGGCCGaGCCCGCCc---- -3'
miRNA:   3'- -GGGGCCC----------GUCGGCcCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 23653 0.73 0.228923
Target:  5'- gCCUGGaGCGccGCCGGGCCCGCgCGg--- -3'
miRNA:   3'- gGGGCC-CGU--CGGCCCGGGCG-GUaaau -5'
5147 3' -63.5 NC_001798.1 + 23922 0.66 0.576584
Target:  5'- gCCUCGGGCGccCCGGcGCCCGUg----- -3'
miRNA:   3'- -GGGGCCCGUc-GGCC-CGGGCGguaaau -5'
5147 3' -63.5 NC_001798.1 + 24483 0.66 0.53731
Target:  5'- cCCUgGGGCGccugagcGCCGcGCCCGCCu---- -3'
miRNA:   3'- -GGGgCCCGU-------CGGCcCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 24676 0.71 0.294056
Target:  5'- gCCgGGGCuGGCCGgagcccGGCCCGCCGc--- -3'
miRNA:   3'- gGGgCCCG-UCGGC------CCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 24721 0.66 0.538258
Target:  5'- gCCCgCGGGCgcGGCCGc-CCCGCCGc--- -3'
miRNA:   3'- -GGG-GCCCG--UCGGCccGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25073 0.68 0.438365
Target:  5'- gCCCCGcccCGGCCaGGGCgCCGCCGg--- -3'
miRNA:   3'- -GGGGCcc-GUCGG-CCCG-GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25145 0.67 0.519417
Target:  5'- gCCCCGcGGCcGCCccucccgcggGGGCCgCGCCc---- -3'
miRNA:   3'- -GGGGC-CCGuCGG----------CCCGG-GCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 25214 0.71 0.280588
Target:  5'- gCCCCGcGGCGcugacccGCC-GGCCCGCCGa--- -3'
miRNA:   3'- -GGGGC-CCGU-------CGGcCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25253 0.69 0.380592
Target:  5'- aCCCgcaGGGCGGCU-GGCgCCGCCAg--- -3'
miRNA:   3'- -GGGg--CCCGUCGGcCCG-GGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25453 0.67 0.510094
Target:  5'- cCCCCcGGCGG-CGcGCCCGCCGc--- -3'
miRNA:   3'- -GGGGcCCGUCgGCcCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25581 0.67 0.500842
Target:  5'- -gCCGGGCgaggaccuGGCCgcGGGCCgCGCCGg--- -3'
miRNA:   3'- ggGGCCCG--------UCGG--CCCGG-GCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25672 0.78 0.110546
Target:  5'- gCCCUGGGCaaccGGCucugCGGGCCCGCCAc--- -3'
miRNA:   3'- -GGGGCCCG----UCG----GCCCGGGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 25814 0.66 0.557327
Target:  5'- uCCUgGGGCugcuGGCCGGcGCCUGCgAc--- -3'
miRNA:   3'- -GGGgCCCG----UCGGCC-CGGGCGgUaaau -5'
5147 3' -63.5 NC_001798.1 + 26184 0.7 0.34256
Target:  5'- cUCCCGGcGCuggacGGCCGGGC-CGCCGc--- -3'
miRNA:   3'- -GGGGCC-CG-----UCGGCCCGgGCGGUaaau -5'
5147 3' -63.5 NC_001798.1 + 26211 0.67 0.491664
Target:  5'- gCCUCGGGCG--CGGGCgaCGCCAUg-- -3'
miRNA:   3'- -GGGGCCCGUcgGCCCGg-GCGGUAaau -5'
5147 3' -63.5 NC_001798.1 + 26299 0.69 0.372763
Target:  5'- gCCUGGGCGcGCCGcugcGGCCCGUCu---- -3'
miRNA:   3'- gGGGCCCGU-CGGC----CCGGGCGGuaaau -5'
5147 3' -63.5 NC_001798.1 + 27877 0.69 0.380592
Target:  5'- gCUCCGGGCcuacGCCGagcccagccGCCCGCCAUg-- -3'
miRNA:   3'- -GGGGCCCGu---CGGCc--------CGGGCGGUAaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.