miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 5' -55.3 NC_001798.1 + 29943 0.66 0.936606
Target:  5'- cGCUugaCGGG---GCCGACCCCCgGc -3'
miRNA:   3'- -CGAuagGUCCuaaUGGCUGGGGGgCc -5'
5147 5' -55.3 NC_001798.1 + 3885 0.66 0.936606
Target:  5'- cGCgccCCGGGGgcgggggGCCGGCCCCgggccaCGGc -3'
miRNA:   3'- -CGauaGGUCCUaa-----UGGCUGGGGg-----GCC- -5'
5147 5' -55.3 NC_001798.1 + 151259 0.66 0.936606
Target:  5'- --aGUCCAcGGccgUGCCGGCCCgCaCGGc -3'
miRNA:   3'- cgaUAGGU-CCua-AUGGCUGGGgG-GCC- -5'
5147 5' -55.3 NC_001798.1 + 69120 0.66 0.93168
Target:  5'- ---cUCCAGGA--GCUGGCCCCaggccUCGGc -3'
miRNA:   3'- cgauAGGUCCUaaUGGCUGGGG-----GGCC- -5'
5147 5' -55.3 NC_001798.1 + 94169 0.66 0.930157
Target:  5'- cGCUGUCgCuGGAcccguacaccugcggGCCGugCCCCCu- -3'
miRNA:   3'- -CGAUAG-GuCCUaa-------------UGGCugGGGGGcc -5'
5147 5' -55.3 NC_001798.1 + 7443 0.67 0.926521
Target:  5'- ----cCCAGGGa-GCCuaGACCCCCaCGGg -3'
miRNA:   3'- cgauaGGUCCUaaUGG--CUGGGGG-GCC- -5'
5147 5' -55.3 NC_001798.1 + 97032 0.67 0.926521
Target:  5'- uCUGUCCgcgAGGAg-GCCGACgCCCUGc -3'
miRNA:   3'- cGAUAGG---UCCUaaUGGCUGgGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 18302 0.67 0.926521
Target:  5'- uGCUcgCCGGGAagGCCGggGCCguguuuguCUCCGGc -3'
miRNA:   3'- -CGAuaGGUCCUaaUGGC--UGG--------GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21067 0.67 0.926521
Target:  5'- uGUUGggaUCGGGGcc-CCGuCCCCCCGGc -3'
miRNA:   3'- -CGAUa--GGUCCUaauGGCuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 27963 0.67 0.926521
Target:  5'- nGCgcUCCAGccgUGCCG-CgCCCCGGc -3'
miRNA:   3'- -CGauAGGUCcuaAUGGCuGgGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 27987 0.67 0.926521
Target:  5'- nGCgcUCCAGccgUGCCG-CgCCCCGGc -3'
miRNA:   3'- -CGauAGGUCcuaAUGGCuGgGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 150158 0.67 0.926521
Target:  5'- cGCgccucuUCCGGGGgcggGCCGccGCCCCCUc- -3'
miRNA:   3'- -CGau----AGGUCCUaa--UGGC--UGGGGGGcc -5'
5147 5' -55.3 NC_001798.1 + 147207 0.67 0.921128
Target:  5'- gGCgGUCCGGc----CCGGgCCCCCGGc -3'
miRNA:   3'- -CGaUAGGUCcuaauGGCUgGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 89269 0.67 0.921128
Target:  5'- --gGUCgAGGAc--CCgGGCCCCCUGGu -3'
miRNA:   3'- cgaUAGgUCCUaauGG-CUGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 64579 0.67 0.921128
Target:  5'- cGC-GUCCAGGA--GCCGcuuCCCgCCGa -3'
miRNA:   3'- -CGaUAGGUCCUaaUGGCu--GGGgGGCc -5'
5147 5' -55.3 NC_001798.1 + 67560 0.67 0.915502
Target:  5'- cGCcg-CCAGGGggGgCGACCUcgggcuCCCGGg -3'
miRNA:   3'- -CGauaGGUCCUaaUgGCUGGG------GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 96993 0.67 0.915502
Target:  5'- gGCggggCCAGG---GCCGGCCCgCCGc -3'
miRNA:   3'- -CGaua-GGUCCuaaUGGCUGGGgGGCc -5'
5147 5' -55.3 NC_001798.1 + 100292 0.67 0.915502
Target:  5'- cGCgg-CCGGGGacgugcuacaGCCG-CCCCCUGGu -3'
miRNA:   3'- -CGauaGGUCCUaa--------UGGCuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 54209 0.67 0.915502
Target:  5'- cGCUucUgCAGGAccGCCGcCCCCCUGu -3'
miRNA:   3'- -CGAu-AgGUCCUaaUGGCuGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 93564 0.67 0.915502
Target:  5'- uGCUGUgCGGGuucucuCCGGCCCUgCUGGc -3'
miRNA:   3'- -CGAUAgGUCCuaau--GGCUGGGG-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.