miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 5' -55.3 NC_001798.1 + 51950 0.67 0.909644
Target:  5'- cGCUGcucagCgCGGGAgggGCCGcGCCCCCCc- -3'
miRNA:   3'- -CGAUa----G-GUCCUaa-UGGC-UGGGGGGcc -5'
5147 5' -55.3 NC_001798.1 + 88962 0.67 0.909644
Target:  5'- uGCuUGUCgAGGAgga-CGGCCUCCuCGGg -3'
miRNA:   3'- -CG-AUAGgUCCUaaugGCUGGGGG-GCC- -5'
5147 5' -55.3 NC_001798.1 + 71224 0.67 0.903554
Target:  5'- uGCUGcagCUAGGGgaGCCG-CCCUCCGc -3'
miRNA:   3'- -CGAUa--GGUCCUaaUGGCuGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 135753 0.67 0.903554
Target:  5'- cGCUGagacgaauccUCCGGcGGccggccGCCGGCCCgCCGGa -3'
miRNA:   3'- -CGAU----------AGGUC-CUaa----UGGCUGGGgGGCC- -5'
5147 5' -55.3 NC_001798.1 + 82066 0.67 0.903554
Target:  5'- ----cCCGGGGccccgcgGCCGGCCcaCCCCGGc -3'
miRNA:   3'- cgauaGGUCCUaa-----UGGCUGG--GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 46897 0.67 0.897237
Target:  5'- uGCUGUCCguuggacaAGGAUcGCCcugGGCCCCCa-- -3'
miRNA:   3'- -CGAUAGG--------UCCUAaUGG---CUGGGGGgcc -5'
5147 5' -55.3 NC_001798.1 + 129350 0.67 0.897237
Target:  5'- aGCgcccgCCGGGccugGCgGGgCCCCCGGa -3'
miRNA:   3'- -CGaua--GGUCCuaa-UGgCUgGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 104170 0.68 0.890694
Target:  5'- gGC-GUCCAGGcacagGgCGGCCagCCCCGGa -3'
miRNA:   3'- -CGaUAGGUCCuaa--UgGCUGG--GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 88752 0.68 0.890694
Target:  5'- ----aCCGGGGgcgcgcaUGCCGGCCgCCuCCGGa -3'
miRNA:   3'- cgauaGGUCCUa------AUGGCUGG-GG-GGCC- -5'
5147 5' -55.3 NC_001798.1 + 121270 0.68 0.883929
Target:  5'- cGCUGUCCGcccucgUGCgCGGCCgCCCCGa -3'
miRNA:   3'- -CGAUAGGUccua--AUG-GCUGG-GGGGCc -5'
5147 5' -55.3 NC_001798.1 + 91469 0.68 0.876946
Target:  5'- aGCU---CGGGGUgggauggcggUGCCGAuguuCCCCCCGGc -3'
miRNA:   3'- -CGAuagGUCCUA----------AUGGCU----GGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 80997 0.68 0.876946
Target:  5'- cGCgGUCUuguGGGAagccCCGgaGCCCCCCGGc -3'
miRNA:   3'- -CGaUAGG---UCCUaau-GGC--UGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 138617 0.68 0.875523
Target:  5'- cGCUGaCCGGGucgcgcaccaGCCacuCCCCCCGGc -3'
miRNA:   3'- -CGAUaGGUCCuaa-------UGGcu-GGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 3022 0.68 0.869749
Target:  5'- gGCgggCCGGGcu--CCGGCCagCCCCGGc -3'
miRNA:   3'- -CGauaGGUCCuaauGGCUGG--GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 91616 0.68 0.862344
Target:  5'- cGCg--CUuauGGGcgGCCGGCCgCCCGGg -3'
miRNA:   3'- -CGauaGGu--CCUaaUGGCUGGgGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 51495 0.68 0.862344
Target:  5'- aGCUGcaggcggcauUCCcccuGGAccGCCuGACCCCCCGa -3'
miRNA:   3'- -CGAU----------AGGu---CCUaaUGG-CUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 12894 0.69 0.854736
Target:  5'- uGCUGguguaCGGGGgcuugggGCCGugCCaCCCGGc -3'
miRNA:   3'- -CGAUag---GUCCUaa-----UGGCugGG-GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 114690 0.69 0.854736
Target:  5'- gGCga-CCAGGGUUGCCcgGGCgaCCCUGGu -3'
miRNA:   3'- -CGauaGGUCCUAAUGG--CUGg-GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 37408 0.69 0.846931
Target:  5'- gGCggGUCCGuGGGgccgGCCGACCaaCCCCGc -3'
miRNA:   3'- -CGa-UAGGU-CCUaa--UGGCUGG--GGGGCc -5'
5147 5' -55.3 NC_001798.1 + 154088 0.69 0.846931
Target:  5'- gGCUGgagcgCCGGGGcgcgGCCGGCgccggggaCCCCGGc -3'
miRNA:   3'- -CGAUa----GGUCCUaa--UGGCUGg-------GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.