miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 147231 0.67 0.826163
Target:  5'- gGAGCGCGgGGgccccggggccccggGC-CGcGCCGGCGGCGu -3'
miRNA:   3'- -UUUGUGCgCUa--------------UGcGC-CGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 9651 0.67 0.825326
Target:  5'- gAGGCGCaGCGGgcCGCGcGCgGAgGGCGc -3'
miRNA:   3'- -UUUGUG-CGCUauGCGC-CGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 135556 0.67 0.825326
Target:  5'- -uGCGCGCcGUACuuuCGGCCaACGGCa -3'
miRNA:   3'- uuUGUGCGcUAUGc--GCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 78216 0.67 0.822808
Target:  5'- gGAGCucCGCGAU-CGCcuggacgccauccgGGCCGACGuGCa -3'
miRNA:   3'- -UUUGu-GCGCUAuGCG--------------CCGGCUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 116326 0.67 0.817724
Target:  5'- uGACGCGgGGgggcacgagcccgucUACGCGGCggcgugcaacguggCGACGGCc -3'
miRNA:   3'- uUUGUGCgCU---------------AUGCGCCG--------------GCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 86166 0.67 0.816872
Target:  5'- -cGCAUGCGcgACGCGGCCccGCGuuuuGCGc -3'
miRNA:   3'- uuUGUGCGCuaUGCGCCGGc-UGC----CGC- -5'
5148 3' -57.5 NC_001798.1 + 2537 0.67 0.816872
Target:  5'- cGGgGCGgGggGCGCGGCCcccgcgggaggGGCGGCc -3'
miRNA:   3'- uUUgUGCgCuaUGCGCCGG-----------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 146504 0.67 0.816872
Target:  5'- cGGCaACGCcccGCGcCGGCCG-CGGCGg -3'
miRNA:   3'- uUUG-UGCGcuaUGC-GCCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 22394 0.67 0.816872
Target:  5'- gGAACcccgGCGAgcCGgGGCgCGGCGGCGu -3'
miRNA:   3'- -UUUGug--CGCUauGCgCCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 30896 0.67 0.816872
Target:  5'- cGGCACGgacgacgaggaCGAUgACcUGGCCGACGGUGa -3'
miRNA:   3'- uUUGUGC-----------GCUA-UGcGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 48673 0.68 0.781497
Target:  5'- cGAGCGCGgGggACG-GGCCGcccggaGCGGUGg -3'
miRNA:   3'- -UUUGUGCgCuaUGCgCCGGC------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 43055 0.68 0.781497
Target:  5'- cGGCGCGUGAgcCGcCGGCCGAgCGcGCc -3'
miRNA:   3'- uUUGUGCGCUauGC-GCCGGCU-GC-CGc -5'
5148 3' -57.5 NC_001798.1 + 8877 0.68 0.781497
Target:  5'- ---gACGCGGaaggGCGCuGGCgGAgGGCGg -3'
miRNA:   3'- uuugUGCGCUa---UGCG-CCGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2101 0.68 0.781497
Target:  5'- gGGGCcCGCccccgGCGCGGCCcGCGGCc -3'
miRNA:   3'- -UUUGuGCGcua--UGCGCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 52515 0.68 0.781497
Target:  5'- cGACGCgGCGGccGCGCGcGCCGugcUGGCGa -3'
miRNA:   3'- uUUGUG-CGCUa-UGCGC-CGGCu--GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 102726 0.68 0.781497
Target:  5'- cGACgACGCGAcuugACGCGcaCgGACGGCGa -3'
miRNA:   3'- uUUG-UGCGCUa---UGCGCc-GgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 122807 0.68 0.781497
Target:  5'- -uGCugGCGcaucUGgGCGGCCagggcggucgggGGCGGCGg -3'
miRNA:   3'- uuUGugCGCu---AUgCGCCGG------------CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 53106 0.68 0.781497
Target:  5'- cGGGCGCGCGGcGCgagcucccuGCGGCUGgcGCGGUGc -3'
miRNA:   3'- -UUUGUGCGCUaUG---------CGCCGGC--UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 77703 0.68 0.781497
Target:  5'- gGGGCAgcaGCGA-GCGCugGGCCGcCGGCGu -3'
miRNA:   3'- -UUUGUg--CGCUaUGCG--CCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 55716 0.68 0.780584
Target:  5'- uGGACGCGUgucagagcggccaGGUGCuugGCGGCCGcACGGgGg -3'
miRNA:   3'- -UUUGUGCG-------------CUAUG---CGCCGGC-UGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.