Results 41 - 60 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5148 | 3' | -57.5 | NC_001798.1 | + | 2755 | 0.66 | 0.857362 |
Target: 5'- aGAGCAgGUc---CGCGGCggCGGCGGCGg -3' miRNA: 3'- -UUUGUgCGcuauGCGCCG--GCUGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 43509 | 0.66 | 0.857362 |
Target: 5'- -uGCGCGC---GCGCaGGuaGGCGGCGg -3' miRNA: 3'- uuUGUGCGcuaUGCG-CCggCUGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 97648 | 0.66 | 0.857362 |
Target: 5'- cGGACGUGCGGga-GC-GCCGGCGGCu -3' miRNA: 3'- -UUUGUGCGCUaugCGcCGGCUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 69508 | 0.66 | 0.857362 |
Target: 5'- aGGACGCGCcgGAgcgggGCGUGGCCcGCGaGCu -3' miRNA: 3'- -UUUGUGCG--CUa----UGCGCCGGcUGC-CGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 113487 | 0.66 | 0.862653 |
Target: 5'- ---uGCGUGAUcaugggcgGCGCGGCCcugugcgcccugguGGCGGCc -3' miRNA: 3'- uuugUGCGCUA--------UGCGCCGG--------------CUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 19841 | 0.66 | 0.864891 |
Target: 5'- ---uGCGCGAcACGCGcCCGG-GGCGg -3' miRNA: 3'- uuugUGCGCUaUGCGCcGGCUgCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 61198 | 0.66 | 0.864891 |
Target: 5'- -uGCAC-CG--GCGCGcGCCGGCGGUu -3' miRNA: 3'- uuUGUGcGCuaUGCGC-CGGCUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 22394 | 0.67 | 0.816872 |
Target: 5'- gGAACcccgGCGAgcCGgGGCgCGGCGGCGu -3' miRNA: 3'- -UUUGug--CGCUauGCgCCG-GCUGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 30896 | 0.67 | 0.816872 |
Target: 5'- cGGCACGgacgacgaggaCGAUgACcUGGCCGACGGUGa -3' miRNA: 3'- uUUGUGC-----------GCUA-UGcGCCGGCUGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 4025 | 0.67 | 0.815161 |
Target: 5'- uGGCGuCGCGGccggccaccgccGCGCGGgcCCGGCGGCGc -3' miRNA: 3'- uUUGU-GCGCUa-----------UGCGCC--GGCUGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 134457 | 0.67 | 0.808253 |
Target: 5'- cGAGCACccCGGcGCGCGGUuggCGugGGCGc -3' miRNA: 3'- -UUUGUGc-GCUaUGCGCCG---GCugCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 39707 | 0.67 | 0.808253 |
Target: 5'- cGGGgAUGCGGUGCcuUGGUCGACGGgGg -3' miRNA: 3'- -UUUgUGCGCUAUGc-GCCGGCUGCCgC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 146504 | 0.67 | 0.816872 |
Target: 5'- cGGCaACGCcccGCGcCGGCCG-CGGCGg -3' miRNA: 3'- uUUG-UGCGcuaUGC-GCCGGCuGCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 2537 | 0.67 | 0.816872 |
Target: 5'- cGGgGCGgGggGCGCGGCCcccgcgggaggGGCGGCc -3' miRNA: 3'- uUUgUGCgCuaUGCGCCGG-----------CUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 86166 | 0.67 | 0.816872 |
Target: 5'- -cGCAUGCGcgACGCGGCCccGCGuuuuGCGc -3' miRNA: 3'- uuUGUGCGCuaUGCGCCGGc-UGC----CGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 116326 | 0.67 | 0.817724 |
Target: 5'- uGACGCGgGGgggcacgagcccgucUACGCGGCggcgugcaacguggCGACGGCc -3' miRNA: 3'- uUUGUGCgCU---------------AUGCGCCG--------------GCUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 78216 | 0.67 | 0.822808 |
Target: 5'- gGAGCucCGCGAU-CGCcuggacgccauccgGGCCGACGuGCa -3' miRNA: 3'- -UUUGu-GCGCUAuGCG--------------CCGGCUGC-CGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 135556 | 0.67 | 0.825326 |
Target: 5'- -uGCGCGCcGUACuuuCGGCCaACGGCa -3' miRNA: 3'- uuUGUGCGcUAUGc--GCCGGcUGCCGc -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 9651 | 0.67 | 0.825326 |
Target: 5'- gAGGCGCaGCGGgcCGCGcGCgGAgGGCGc -3' miRNA: 3'- -UUUGUG-CGCUauGCGC-CGgCUgCCGC- -5' |
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5148 | 3' | -57.5 | NC_001798.1 | + | 2416 | 0.67 | 0.808253 |
Target: 5'- aGGGCGCcgGCGugugGCugggccccgGCGGCUGGCGGCGc -3' miRNA: 3'- -UUUGUG--CGCua--UG---------CGCCGGCUGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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