miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 24550 0.72 0.505853
Target:  5'- cGGCGCcgGCGGUggugGCgGCGGCCGGCGcGCGg -3'
miRNA:   3'- uUUGUG--CGCUA----UG-CGCCGGCUGC-CGC- -5'
5148 3' -57.5 NC_001798.1 + 121976 0.72 0.505853
Target:  5'- -cGCGCGCGccccaagcACGCGGCCucCGGCGu -3'
miRNA:   3'- uuUGUGCGCua------UGCGCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 114860 0.72 0.505853
Target:  5'- cGACACGCGcggGCGgcCGGUCGACGGgGu -3'
miRNA:   3'- uUUGUGCGCua-UGC--GCCGGCUGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 46205 0.72 0.515458
Target:  5'- -cGCGCGCaAUACGCGGaggGACGGCu -3'
miRNA:   3'- uuUGUGCGcUAUGCGCCgg-CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 116029 0.72 0.515458
Target:  5'- cAACACGCGAUGCGCGGCguucgugaaCGACuacucGCu -3'
miRNA:   3'- uUUGUGCGCUAUGCGCCG---------GCUGc----CGc -5'
5148 3' -57.5 NC_001798.1 + 54540 0.72 0.525136
Target:  5'- -cGCACGUcg-ACGCGGCCGAcCGGgGu -3'
miRNA:   3'- uuUGUGCGcuaUGCGCCGGCU-GCCgC- -5'
5148 3' -57.5 NC_001798.1 + 153037 0.72 0.534882
Target:  5'- -cGCGCgGCGGcGCGCGGuuGGcCGGCGc -3'
miRNA:   3'- uuUGUG-CGCUaUGCGCCggCU-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 26336 0.72 0.544691
Target:  5'- gGGGCGCGaCGccGUGCGCGGCgGccCGGCGg -3'
miRNA:   3'- -UUUGUGC-GC--UAUGCGCCGgCu-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 95660 0.72 0.551592
Target:  5'- --cCACGCGGcgucguucggcgguUugGCGG-CGGCGGCGg -3'
miRNA:   3'- uuuGUGCGCU--------------AugCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 51167 0.72 0.554557
Target:  5'- cGACGCGCGuccgagGCcCGGgCGGCGGCGc -3'
miRNA:   3'- uUUGUGCGCua----UGcGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 154042 0.72 0.554557
Target:  5'- gGAGCGCGcCGggGCGCGGCaCGGCuggagcgccggGGCGc -3'
miRNA:   3'- -UUUGUGC-GCuaUGCGCCG-GCUG-----------CCGC- -5'
5148 3' -57.5 NC_001798.1 + 24294 0.71 0.564476
Target:  5'- uGGCGCGCGAgaACGCGGCgcUGACcggGGCGc -3'
miRNA:   3'- uUUGUGCGCUa-UGCGCCG--GCUG---CCGC- -5'
5148 3' -57.5 NC_001798.1 + 93093 0.71 0.57444
Target:  5'- gGGGCGCGCGcgACGCcgggaacaagGGCCcGGCgGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaUGCG----------CCGG-CUG-CCGC- -5'
5148 3' -57.5 NC_001798.1 + 23735 0.71 0.584444
Target:  5'- cGAGCugGaCGccgACGCGGCCucCGGCGc -3'
miRNA:   3'- -UUUGugC-GCua-UGCGCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 42298 0.71 0.584444
Target:  5'- -cGCACGCGGagccguCGgGGCCGAucuUGGCGa -3'
miRNA:   3'- uuUGUGCGCUau----GCgCCGGCU---GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 63586 0.71 0.594482
Target:  5'- cAggUACGCGAUG-GCGGCgaacgaGGCGGCa -3'
miRNA:   3'- -UuuGUGCGCUAUgCGCCGg-----CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 75442 0.71 0.594482
Target:  5'- -cGCACGC-AUACGCaGGCCGG-GGUGg -3'
miRNA:   3'- uuUGUGCGcUAUGCG-CCGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 138338 0.71 0.594482
Target:  5'- cGAgACGCGAg--GCGGCCGAgcCGGCc -3'
miRNA:   3'- uUUgUGCGCUaugCGCCGGCU--GCCGc -5'
5148 3' -57.5 NC_001798.1 + 36520 0.71 0.604547
Target:  5'- gGGGCGCGCG----GCGGCCGggcgggggcgcGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaugCGCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 36562 0.71 0.604547
Target:  5'- gGGGCGCGCG----GCGGCCGggcgggggcgcGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaugCGCCGGC-----------UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.