miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 78383 0.75 0.389372
Target:  5'- aGGACGCGCuGGU-CGCGuGCgCGGCGGCGu -3'
miRNA:   3'- -UUUGUGCG-CUAuGCGC-CG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 57 0.74 0.406145
Target:  5'- gGGGgGCGCGA-AgGCGGgCGGCGGCGg -3'
miRNA:   3'- -UUUgUGCGCUaUgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 24436 0.74 0.406145
Target:  5'- cGAGCGCGCGGUGCccgcCGGCU-ACGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGc---GCCGGcUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 154395 0.74 0.406145
Target:  5'- gGGGgGCGCGA-AgGCGGgCGGCGGCGg -3'
miRNA:   3'- -UUUgUGCGCUaUgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 96327 0.74 0.406145
Target:  5'- cAACGCGCuccaGGUGCGCGuGCUG-CGGCGg -3'
miRNA:   3'- uUUGUGCG----CUAUGCGC-CGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 153960 0.74 0.406145
Target:  5'- -cGCAggaGCGAggACGCGGCCGGCGcGCu -3'
miRNA:   3'- uuUGUg--CGCUa-UGCGCCGGCUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 42759 0.74 0.406145
Target:  5'- cAGACGgGCGGcGCGCggGGCCGACaGGCGc -3'
miRNA:   3'- -UUUGUgCGCUaUGCG--CCGGCUG-CCGC- -5'
5148 3' -57.5 NC_001798.1 + 144741 0.74 0.4147
Target:  5'- ---gACG-GGUGCGUGGCUGACGGCc -3'
miRNA:   3'- uuugUGCgCUAUGCGCCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 133449 0.74 0.4147
Target:  5'- gGAGgACGCGGUuaagcGCGUGGCCGACGcccugaGCGg -3'
miRNA:   3'- -UUUgUGCGCUA-----UGCGCCGGCUGC------CGC- -5'
5148 3' -57.5 NC_001798.1 + 28636 0.74 0.423365
Target:  5'- uGGGCGCGCGA-GCG-GGCCGACcGCGa -3'
miRNA:   3'- -UUUGUGCGCUaUGCgCCGGCUGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 79359 0.74 0.423365
Target:  5'- ---aGCGCG-UACGCcagGGCCGGCGGCc -3'
miRNA:   3'- uuugUGCGCuAUGCG---CCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 1217 0.74 0.423365
Target:  5'- --cCGCGCGGccCGCGGCCGACGcccaGCGu -3'
miRNA:   3'- uuuGUGCGCUauGCGCCGGCUGC----CGC- -5'
5148 3' -57.5 NC_001798.1 + 1603 0.74 0.43834
Target:  5'- -cGCACGCGGUAccgcacguuggcccCGCGGCagaggcgcagCGGCGGCGc -3'
miRNA:   3'- uuUGUGCGCUAU--------------GCGCCG----------GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 102554 0.73 0.449995
Target:  5'- -cGCACGCGGUcaGCGGCgGGUGGCGg -3'
miRNA:   3'- uuUGUGCGCUAugCGCCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 153773 0.73 0.449995
Target:  5'- gGGGCGCuGCGGcccgcgcuccuUGCGCGG-CGGCGGCGg -3'
miRNA:   3'- -UUUGUG-CGCU-----------AUGCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 41157 0.73 0.459075
Target:  5'- aGAACACGCucGAcacUAUGCGGCCGGCGuaGu -3'
miRNA:   3'- -UUUGUGCG--CU---AUGCGCCGGCUGCcgC- -5'
5148 3' -57.5 NC_001798.1 + 26501 0.73 0.462734
Target:  5'- --cCGCGCGGggacggugcuggcCGCGGCgGGCGGCGg -3'
miRNA:   3'- uuuGUGCGCUau-----------GCGCCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150570 0.73 0.468251
Target:  5'- gGGGCcCGCGGggcgGCGCGGa-GACGGCGg -3'
miRNA:   3'- -UUUGuGCGCUa---UGCGCCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 88829 0.73 0.471023
Target:  5'- -cGCGCGCGucgcgaggagcaucuCGCGGCCGAUGGUc -3'
miRNA:   3'- uuUGUGCGCuau------------GCGCCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 2607 0.73 0.496326
Target:  5'- gGGGgGCGCGggGCGCcGcCCGGCGGCGc -3'
miRNA:   3'- -UUUgUGCGCuaUGCGcC-GGCUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.