miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 97648 0.66 0.857362
Target:  5'- cGGACGUGCGGga-GC-GCCGGCGGCu -3'
miRNA:   3'- -UUUGUGCGCUaugCGcCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 69508 0.66 0.857362
Target:  5'- aGGACGCGCcgGAgcgggGCGUGGCCcGCGaGCu -3'
miRNA:   3'- -UUUGUGCG--CUa----UGCGCCGGcUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 2755 0.66 0.857362
Target:  5'- aGAGCAgGUc---CGCGGCggCGGCGGCGg -3'
miRNA:   3'- -UUUGUgCGcuauGCGCCG--GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 106457 0.66 0.856598
Target:  5'- cGAACACGCaGAUGCagucuggGCGGC--GCGGCc -3'
miRNA:   3'- -UUUGUGCG-CUAUG-------CGCCGgcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 3280 0.66 0.849635
Target:  5'- -cGCGCGCucgucggccgGcgACGCcgccGCCGACGGCa -3'
miRNA:   3'- uuUGUGCG----------CuaUGCGc---CGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 9144 0.66 0.849635
Target:  5'- cGGCACGCGG-GCGCGGCgccgcccgCGcCGGgGg -3'
miRNA:   3'- uUUGUGCGCUaUGCGCCG--------GCuGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 11972 0.66 0.849635
Target:  5'- cAGgGCG-GAUagGCGgGGCUGugGGCGu -3'
miRNA:   3'- uUUgUGCgCUA--UGCgCCGGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 85185 0.66 0.849635
Target:  5'- --uCACGUGGUAgGCGuGCCGcccGCGaGCGc -3'
miRNA:   3'- uuuGUGCGCUAUgCGC-CGGC---UGC-CGC- -5'
5148 3' -57.5 NC_001798.1 + 21960 0.66 0.849635
Target:  5'- gGAGCGCGgGAUgACGCgGGCCccgGGCagGGCGc -3'
miRNA:   3'- -UUUGUGCgCUA-UGCG-CCGG---CUG--CCGC- -5'
5148 3' -57.5 NC_001798.1 + 122064 0.66 0.849635
Target:  5'- uGGGCGCGuCGG-ACGCGGa-GGCGGUGc -3'
miRNA:   3'- -UUUGUGC-GCUaUGCGCCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 137046 0.66 0.849635
Target:  5'- aAAAC-CGCGAUACGuCGGCUGguccccGCaGCGc -3'
miRNA:   3'- -UUUGuGCGCUAUGC-GCCGGC------UGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 57020 0.66 0.849635
Target:  5'- cGAACGCGCacccaggucccGUACGCGGaCgGGCGGUc -3'
miRNA:   3'- -UUUGUGCGc----------UAUGCGCC-GgCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 77850 0.66 0.849635
Target:  5'- cGAGCAgGCGcu-CGCGGCCaacgccgaGGCGGUc -3'
miRNA:   3'- -UUUGUgCGCuauGCGCCGG--------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 29287 0.66 0.849635
Target:  5'- aGAACACGCaGAgccuCGCGcGCCGcCGGg- -3'
miRNA:   3'- -UUUGUGCG-CUau--GCGC-CGGCuGCCgc -5'
5148 3' -57.5 NC_001798.1 + 138670 0.66 0.844906
Target:  5'- -uGCACGCGGUcguauuccgccaugcGCGUGGagucgaacgCGACGGCc -3'
miRNA:   3'- uuUGUGCGCUA---------------UGCGCCg--------GCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 78742 0.66 0.841715
Target:  5'- aAAACGCGCGAgcuCGaCGuGCCcGCGGUu -3'
miRNA:   3'- -UUUGUGCGCUau-GC-GC-CGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 75284 0.66 0.841715
Target:  5'- cGGCGCGCGAUGcCGCccuGGCCcGCgaGGUGg -3'
miRNA:   3'- uUUGUGCGCUAU-GCG---CCGGcUG--CCGC- -5'
5148 3' -57.5 NC_001798.1 + 63256 0.66 0.841715
Target:  5'- aAAGCugGCGu--CGgGGgCGGgGGCGg -3'
miRNA:   3'- -UUUGugCGCuauGCgCCgGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 62446 0.66 0.841715
Target:  5'- cGGACGuCGcCGGUGgGCcGCgCGACGGCGc -3'
miRNA:   3'- -UUUGU-GC-GCUAUgCGcCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 41424 0.66 0.841715
Target:  5'- -uAUugGCGuagcagACGCGGgCGugGGgGg -3'
miRNA:   3'- uuUGugCGCua----UGCGCCgGCugCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.