miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 78742 0.66 0.841715
Target:  5'- aAAACGCGCGAgcuCGaCGuGCCcGCGGUu -3'
miRNA:   3'- -UUUGUGCGCUau-GC-GC-CGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 15338 0.66 0.840109
Target:  5'- ---gGCGCGGUagcggggggcgagGCGgugaggggggaauCGGCCGugGGCGc -3'
miRNA:   3'- uuugUGCGCUA-------------UGC-------------GCCGGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 25433 0.66 0.83361
Target:  5'- --cCGCGCGcUGCGCcGCCccgccccccGGCGGCGc -3'
miRNA:   3'- uuuGUGCGCuAUGCGcCGG---------CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 31656 0.66 0.83361
Target:  5'- ---aGCGCGG-ACGCGGCCG--GGCc -3'
miRNA:   3'- uuugUGCGCUaUGCGCCGGCugCCGc -5'
5148 3' -57.5 NC_001798.1 + 34606 0.66 0.83361
Target:  5'- uGGgACGCGGgcaaaGgGCGG-CGGCGGCGg -3'
miRNA:   3'- uUUgUGCGCUa----UgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 79271 0.66 0.83361
Target:  5'- cGACGCgGCGGc-CGCGGaccuggccCCGugGGCGg -3'
miRNA:   3'- uUUGUG-CGCUauGCGCC--------GGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 129299 0.66 0.83361
Target:  5'- --cCGCGCGG-GCGCGGagGAgGGCGu -3'
miRNA:   3'- uuuGUGCGCUaUGCGCCggCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 147231 0.67 0.826163
Target:  5'- gGAGCGCGgGGgccccggggccccggGC-CGcGCCGGCGGCGu -3'
miRNA:   3'- -UUUGUGCgCUa--------------UGcGC-CGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 9651 0.67 0.825326
Target:  5'- gAGGCGCaGCGGgcCGCGcGCgGAgGGCGc -3'
miRNA:   3'- -UUUGUG-CGCUauGCGC-CGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 135556 0.67 0.825326
Target:  5'- -uGCGCGCcGUACuuuCGGCCaACGGCa -3'
miRNA:   3'- uuUGUGCGcUAUGc--GCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 78216 0.67 0.822808
Target:  5'- gGAGCucCGCGAU-CGCcuggacgccauccgGGCCGACGuGCa -3'
miRNA:   3'- -UUUGu-GCGCUAuGCG--------------CCGGCUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 116326 0.67 0.817724
Target:  5'- uGACGCGgGGgggcacgagcccgucUACGCGGCggcgugcaacguggCGACGGCc -3'
miRNA:   3'- uUUGUGCgCU---------------AUGCGCCG--------------GCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 30896 0.67 0.816872
Target:  5'- cGGCACGgacgacgaggaCGAUgACcUGGCCGACGGUGa -3'
miRNA:   3'- uUUGUGC-----------GCUA-UGcGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 22394 0.67 0.816872
Target:  5'- gGAACcccgGCGAgcCGgGGCgCGGCGGCGu -3'
miRNA:   3'- -UUUGug--CGCUauGCgCCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 146504 0.67 0.816872
Target:  5'- cGGCaACGCcccGCGcCGGCCG-CGGCGg -3'
miRNA:   3'- uUUG-UGCGcuaUGC-GCCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2537 0.67 0.816872
Target:  5'- cGGgGCGgGggGCGCGGCCcccgcgggaggGGCGGCc -3'
miRNA:   3'- uUUgUGCgCuaUGCGCCGG-----------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 86166 0.67 0.816872
Target:  5'- -cGCAUGCGcgACGCGGCCccGCGuuuuGCGc -3'
miRNA:   3'- uuUGUGCGCuaUGCGCCGGc-UGC----CGC- -5'
5148 3' -57.5 NC_001798.1 + 4025 0.67 0.815161
Target:  5'- uGGCGuCGCGGccggccaccgccGCGCGGgcCCGGCGGCGc -3'
miRNA:   3'- uUUGU-GCGCUa-----------UGCGCC--GGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 39707 0.67 0.808253
Target:  5'- cGGGgAUGCGGUGCcuUGGUCGACGGgGg -3'
miRNA:   3'- -UUUgUGCGCUAUGc-GCCGGCUGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 2416 0.67 0.808253
Target:  5'- aGGGCGCcgGCGugugGCugggccccgGCGGCUGGCGGCGc -3'
miRNA:   3'- -UUUGUG--CGCua--UG---------CGCCGGCUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.