miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 52973 0.66 0.872215
Target:  5'- gAGGCGCGCGAc-CG-GGCUgGGCGGCc -3'
miRNA:   3'- -UUUGUGCGCUauGCgCCGG-CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 75558 0.66 0.872215
Target:  5'- --cCugGCGG-ACGUGGCCGcccacCGGCc -3'
miRNA:   3'- uuuGugCGCUaUGCGCCGGCu----GCCGc -5'
5148 3' -57.5 NC_001798.1 + 84723 0.66 0.872215
Target:  5'- -cGCACGCGGUGuccUGCGuaUguggGGCGGCGg -3'
miRNA:   3'- uuUGUGCGCUAU---GCGCcgG----CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 100277 0.66 0.872215
Target:  5'- cGAUGCGCGucagcuCGCGGCCgggGACGuGCu -3'
miRNA:   3'- uUUGUGCGCuau---GCGCCGG---CUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 153073 0.66 0.872215
Target:  5'- gGGGCGgGCGGa--GCGGCgGgGCGGCGc -3'
miRNA:   3'- -UUUGUgCGCUaugCGCCGgC-UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 113487 0.66 0.862653
Target:  5'- ---uGCGUGAUcaugggcgGCGCGGCCcugugcgcccugguGGCGGCc -3'
miRNA:   3'- uuugUGCGCUA--------UGCGCCGG--------------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 69508 0.66 0.857362
Target:  5'- aGGACGCGCcgGAgcgggGCGUGGCCcGCGaGCu -3'
miRNA:   3'- -UUUGUGCG--CUa----UGCGCCGGcUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 122064 0.66 0.849635
Target:  5'- uGGGCGCGuCGG-ACGCGGa-GGCGGUGc -3'
miRNA:   3'- -UUUGUGC-GCUaUGCGCCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 137046 0.66 0.849635
Target:  5'- aAAAC-CGCGAUACGuCGGCUGguccccGCaGCGc -3'
miRNA:   3'- -UUUGuGCGCUAUGC-GCCGGC------UGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 57020 0.66 0.849635
Target:  5'- cGAACGCGCacccaggucccGUACGCGGaCgGGCGGUc -3'
miRNA:   3'- -UUUGUGCGc----------UAUGCGCC-GgCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 77850 0.66 0.849635
Target:  5'- cGAGCAgGCGcu-CGCGGCCaacgccgaGGCGGUc -3'
miRNA:   3'- -UUUGUgCGCuauGCGCCGG--------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 29287 0.66 0.849635
Target:  5'- aGAACACGCaGAgccuCGCGcGCCGcCGGg- -3'
miRNA:   3'- -UUUGUGCG-CUau--GCGC-CGGCuGCCgc -5'
5148 3' -57.5 NC_001798.1 + 106457 0.66 0.856598
Target:  5'- cGAACACGCaGAUGCagucuggGCGGC--GCGGCc -3'
miRNA:   3'- -UUUGUGCG-CUAUG-------CGCCGgcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 138206 0.66 0.857362
Target:  5'- cGAACccaGgGAgggUGUGGUCGACGGCGg -3'
miRNA:   3'- -UUUGug-CgCUau-GCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 149240 0.66 0.857362
Target:  5'- uGGCcCGCGGggGCGUcGCCGGcCGGCGc -3'
miRNA:   3'- uUUGuGCGCUa-UGCGcCGGCU-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 12259 0.66 0.857362
Target:  5'- gGGGC-CGCGG-ACGaccaGGCCGGUGGCGc -3'
miRNA:   3'- -UUUGuGCGCUaUGCg---CCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 92976 0.66 0.857362
Target:  5'- uGGACGcCGUGGcccGCGCGGCCGcccaccUGGCGu -3'
miRNA:   3'- -UUUGU-GCGCUa--UGCGCCGGCu-----GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2755 0.66 0.857362
Target:  5'- aGAGCAgGUc---CGCGGCggCGGCGGCGg -3'
miRNA:   3'- -UUUGUgCGcuauGCGCCG--GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 43509 0.66 0.857362
Target:  5'- -uGCGCGC---GCGCaGGuaGGCGGCGg -3'
miRNA:   3'- uuUGUGCGcuaUGCG-CCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 97648 0.66 0.857362
Target:  5'- cGGACGUGCGGga-GC-GCCGGCGGCu -3'
miRNA:   3'- -UUUGUGCGCUaugCGcCGGCUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.