miRNA display CGI


Results 41 - 60 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 22340 0.69 0.695129
Target:  5'- cGGACGCGCGGgcgucgggGCGgGGCCGcgcauaauGCGGUu -3'
miRNA:   3'- -UUUGUGCGCUa-------UGCgCCGGC--------UGCCGc -5'
5148 3' -57.5 NC_001798.1 + 22394 0.67 0.816872
Target:  5'- gGAACcccgGCGAgcCGgGGCgCGGCGGCGu -3'
miRNA:   3'- -UUUGug--CGCUauGCgCCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 23667 0.69 0.705048
Target:  5'- cGGGCcCGCGcgGCgGUGGCCGGCcGCGa -3'
miRNA:   3'- -UUUGuGCGCuaUG-CGCCGGCUGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 23735 0.71 0.584444
Target:  5'- cGAGCugGaCGccgACGCGGCCucCGGCGc -3'
miRNA:   3'- -UUUGugC-GCua-UGCGCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 24294 0.71 0.564476
Target:  5'- uGGCGCGCGAgaACGCGGCgcUGACcggGGCGc -3'
miRNA:   3'- uUUGUGCGCUa-UGCGCCG--GCUG---CCGC- -5'
5148 3' -57.5 NC_001798.1 + 24436 0.74 0.406145
Target:  5'- cGAGCGCGCGGUGCccgcCGGCU-ACGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGc---GCCGGcUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 24550 0.72 0.505853
Target:  5'- cGGCGCcgGCGGUggugGCgGCGGCCGGCGcGCGg -3'
miRNA:   3'- uUUGUG--CGCUA----UG-CGCCGGCUGC-CGC- -5'
5148 3' -57.5 NC_001798.1 + 24822 0.77 0.285242
Target:  5'- ---uGCGCGGggaccugcGCGUGGCCGGCGGCa -3'
miRNA:   3'- uuugUGCGCUa-------UGCGCCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 25433 0.66 0.83361
Target:  5'- --cCGCGCGcUGCGCcGCCccgccccccGGCGGCGc -3'
miRNA:   3'- uuuGUGCGCuAUGCGcCGG---------CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 25595 0.66 0.872215
Target:  5'- uGGC-CGCGGgcCGC-GCCGGgGGCGg -3'
miRNA:   3'- uUUGuGCGCUauGCGcCGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 25953 0.79 0.219836
Target:  5'- ---uGCGCcGUGCGCuGGCCGGCGGCGc -3'
miRNA:   3'- uuugUGCGcUAUGCG-CCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 26336 0.72 0.544691
Target:  5'- gGGGCGCGaCGccGUGCGCGGCgGccCGGCGg -3'
miRNA:   3'- -UUUGUGC-GC--UAUGCGCCGgCu-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 26394 0.7 0.665098
Target:  5'- -uGCGCGCGGgcgcUGCuCGaGcCCGACGGCGa -3'
miRNA:   3'- uuUGUGCGCU----AUGcGC-C-GGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 26501 0.73 0.462734
Target:  5'- --cCGCGCGGggacggugcuggcCGCGGCgGGCGGCGg -3'
miRNA:   3'- uuuGUGCGCUau-----------GCGCCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 27226 0.7 0.624729
Target:  5'- gGGGCGCGgGggAgGCGGCCG-CGGgGg -3'
miRNA:   3'- -UUUGUGCgCuaUgCGCCGGCuGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 28059 0.68 0.761116
Target:  5'- gGAAC-CGCGGUcgagagcGCGcCGGCCGcguccucgcuccuGCGGCGc -3'
miRNA:   3'- -UUUGuGCGCUA-------UGC-GCCGGC-------------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 28336 0.68 0.744036
Target:  5'- uGGCGCGCcuGAgccUGC-GCCGGCGGCGg -3'
miRNA:   3'- uUUGUGCG--CUau-GCGcCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 28636 0.74 0.423365
Target:  5'- uGGGCGCGCGA-GCG-GGCCGACcGCGa -3'
miRNA:   3'- -UUUGUGCGCUaUGCgCCGGCUGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 28669 0.69 0.685158
Target:  5'- cGGCGcCGCGugGCgGCGGCCGA-GGCGg -3'
miRNA:   3'- uUUGU-GCGCuaUG-CGCCGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 29287 0.66 0.849635
Target:  5'- aGAACACGCaGAgccuCGCGcGCCGcCGGg- -3'
miRNA:   3'- -UUUGUGCG-CUau--GCGC-CGGCuGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.