miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 4025 0.67 0.815161
Target:  5'- uGGCGuCGCGGccggccaccgccGCGCGGgcCCGGCGGCGc -3'
miRNA:   3'- uUUGU-GCGCUa-----------UGCGCC--GGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 4217 0.69 0.724697
Target:  5'- -cGCugGCGGggGCGCGGgCGGCGuCGu -3'
miRNA:   3'- uuUGugCGCUa-UGCGCCgGCUGCcGC- -5'
5148 3' -57.5 NC_001798.1 + 4356 0.77 0.298667
Target:  5'- cGAGCGCcgGCGGgggGCGC-GCCGGCGGCGg -3'
miRNA:   3'- -UUUGUG--CGCUa--UGCGcCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 5986 0.69 0.711956
Target:  5'- gGGACAC-CGGcUGCGCGGCgGagaccgggacggcaGCGGCGg -3'
miRNA:   3'- -UUUGUGcGCU-AUGCGCCGgC--------------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 8683 0.69 0.685158
Target:  5'- -cGCAcCGCG-UGCGCcGCCGuCGGCGc -3'
miRNA:   3'- uuUGU-GCGCuAUGCGcCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 8877 0.68 0.781497
Target:  5'- ---gACGCGGaaggGCGCuGGCgGAgGGCGg -3'
miRNA:   3'- uuugUGCGCUa---UGCG-CCGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 9144 0.66 0.849635
Target:  5'- cGGCACGCGG-GCGCGGCgccgcccgCGcCGGgGg -3'
miRNA:   3'- uUUGUGCGCUaUGCGCCG--------GCuGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 9590 0.68 0.762993
Target:  5'- -uGCACGCcc-ACGCGGacagcCCGAgGGCGg -3'
miRNA:   3'- uuUGUGCGcuaUGCGCC-----GGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 9651 0.67 0.825326
Target:  5'- gAGGCGCaGCGGgcCGCGcGCgGAgGGCGc -3'
miRNA:   3'- -UUUGUG-CGCUauGCGC-CGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 11972 0.66 0.849635
Target:  5'- cAGgGCG-GAUagGCGgGGCUGugGGCGu -3'
miRNA:   3'- uUUgUGCgCUA--UGCgCCGGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 12259 0.66 0.857362
Target:  5'- gGGGC-CGCGG-ACGaccaGGCCGGUGGCGc -3'
miRNA:   3'- -UUUGuGCGCUaUGCg---CCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 15303 0.69 0.695129
Target:  5'- --uCGCgGCGAccgaaacgUugGCGGCCGAgGGCc -3'
miRNA:   3'- uuuGUG-CGCU--------AugCGCCGGCUgCCGc -5'
5148 3' -57.5 NC_001798.1 + 15338 0.66 0.840109
Target:  5'- ---gGCGCGGUagcggggggcgagGCGgugaggggggaauCGGCCGugGGCGc -3'
miRNA:   3'- uuugUGCGCUA-------------UGC-------------GCCGGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 16052 0.7 0.644933
Target:  5'- cGACGCGUGGUAgGUcGCUGGgGGCGg -3'
miRNA:   3'- uUUGUGCGCUAUgCGcCGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 17243 0.69 0.718832
Target:  5'- --uCGCGCGGggccgagaacaaggACGCGGUgugGACGGCGg -3'
miRNA:   3'- uuuGUGCGCUa-------------UGCGCCGg--CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 19841 0.66 0.864891
Target:  5'- ---uGCGCGAcACGCGcCCGG-GGCGg -3'
miRNA:   3'- uuugUGCGCUaUGCGCcGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 20269 0.7 0.643924
Target:  5'- cAGCAgGCGGccccacgUGCGCGGCCccaGGCGg -3'
miRNA:   3'- uUUGUgCGCU-------AUGCGCCGGcugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 20345 0.68 0.772306
Target:  5'- -cGCAgGCGGUugGCGcuGCCGggcggguucgggGCGGCa -3'
miRNA:   3'- uuUGUgCGCUAugCGC--CGGC------------UGCCGc -5'
5148 3' -57.5 NC_001798.1 + 21960 0.66 0.849635
Target:  5'- gGAGCGCGgGAUgACGCgGGCCccgGGCagGGCGc -3'
miRNA:   3'- -UUUGUGCgCUA-UGCG-CCGG---CUG--CCGC- -5'
5148 3' -57.5 NC_001798.1 + 22289 0.69 0.685158
Target:  5'- --cCGCGCGGgcggaGCGG-CGGCGGCGc -3'
miRNA:   3'- uuuGUGCGCUaug--CGCCgGCUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.